3C4N - JenaLib

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Title :   CRYSTAL STRUCTURE OF DR_0571 PROTEIN FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH ADP. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET DRR125

Authors :   F. Forouhar, Y. Chen, J. Seetharaman, L. Mao, R. Xiao, K. Cunningham, L. A. Owen, M. Maglaqui, M. C. Baran, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)

Date :   30 Jan 08 (Deposition) - 26 Feb 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A  (1x)
Biol. Unit 3: B  (1x)

Keywords :   Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Forouhar, Y. Chen, J. Seetharaman, L. Mao, R. Xiao, K. Cunningham, L. A. Owen, M. Maglaqui, M. C. Baran, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Dr_0571 Protein From Deinococcus Radiodurans In Complex With Adp.
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - UNCHARACTERIZED PROTEIN DR_0571
	Atcc	:	13939
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21
	Expression System Strain	:	BL21(DE3)+MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	DR_0571
	Organism Scientific	:	DEINOCOCCUS RADIODURANS R1
	Organism Taxid	:	243230
	Strain	:	R1 / DSM 20539 / IFO 15346 / LMG 4051 / NCIB 9279

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A
Biological Unit 3 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:42 , GLY A:43 , GLY A:45 , ARG A:46 , GLU A:68 , GLU A:69 , ASN A:74 , ALA A:78 , THR A:79 , THR A:193 , ARG A:194 , ALA A:195 , ALA A:231 , ALA A:232 , GLY A:233 , LEU A:239	BINDING SITE FOR RESIDUE ADP A 411
2	AC2	SOFTWARE	ILE B:42 , GLY B:43 , GLY B:45 , ARG B:46 , GLU B:68 , GLU B:69 , ASN B:74 , ALA B:78 , THR B:79 , THR B:193 , ARG B:194 , ALA B:195 , ALA B:231 , ALA B:232 , GLY B:233 , LEU B:239	BINDING SITE FOR RESIDUE ADP B 411

(no "SS Bond" information available for 3C4N)

Asymmetric Unit

No.	Residues
1	Leu A:72	-	Pro A:73
2	Leu B:72	-	Pro B:73

(no "SAP(SNP)/Variant" information available for 3C4N)

(no "PROSITE Motif" information available for 3C4N)

(no "Exon" information available for 3C4N)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:359
 aligned with Q9RWU4_DEIRA | Q9RWU4 from UniProtKB/TrEMBL  Length:397

    Alignment length:366
                                                                                                                                                                                                                                                                                                                                                                                                     397  
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393   |  
         Q9RWU4_DEIRA    34 EEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGAAGPALVEQGLGLHTRHGRAYRQFPRLDLLSGAQTPVLRASGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLRRELLEDLVGLMDAVPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQAEELAPGLHLLLGGPLADTLGLAAAHELAQRVSAG--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3c4nA01 A:34-121,A:164-258,A:342-399  [code=3.50.50.60, no name defined]                3c4nA02 A:122-163,A:259-341               3c4nA01 A:34-121,A:164-258,A:342-399  [code=3       .50.50.60, no name defined]                3c4nA02 A:122-163,A:259-341 D-Amino Acid Oxidase, subunit A, domain 2              3c4nA01 A:34-121,A:164-258,A:342-399                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhhh....eeee.........hhhhhh..eehhhhh...hhhhhhhhhhhhhhhhhh.....eee..eeeee........eehhhhh..hhhhhh........eeeee...eeehhhhhhhhhhhhhhh...eee...eeeee..eeeee...-------.....eeeeeeeeee.hhhhhhhhhhhhhh.....eeeeee..ee.........eeee..eeeeee..eeeee.........................hhhhhhhhhhhh..hhhhhh.......hhhhh.eeeeeehhhh.....eeeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3c4n A  34 EEAFDIVVIGAGRmGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLT-------VVHETRQIRAGVIIVAAGAAGPALVEQGLGLHTRHGRAYRQFPRLDLLSGAQTPVLRASGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLRRELLEDLVGLmDAVPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQAEELAPGLHLLLGGPLADTLGLAAAHELAQRVSASLE 399
                                    43   |    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    |    -  |    223       233       243       253       263       273       283       293       303       313       323 |     333       343       353       363       373       383       393      
                                        47-MSE                                                                                                                                                          208     216                                                                                                          325-MSE

Chain B from PDB  Type:PROTEIN  Length:359
 aligned with Q9RWU4_DEIRA | Q9RWU4 from UniProtKB/TrEMBL  Length:397

    Alignment length:366
                                                                                                                                                                                                                                                                                                                                                                                                     397  
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393   |  
         Q9RWU4_DEIRA    34 EEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGAAGPALVEQGLGLHTRHGRAYRQFPRLDLLSGAQTPVLRASGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLRRELLEDLVGLMDAVPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQAEELAPGLHLLLGGPLADTLGLAAAHELAQRVSAG--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3c4nB01 B:34-121,B:164-258,B:342-399  [code=3.50.50.60, no name defined]                3c4nB02 B:122-163,B:259-341               3c4nB01 B:34-121,B:164-258,B:342-399  [code=3       .50.50.60, no name defined]                3c4nB02 B:122-163,B:259-341 D-Amino Acid Oxidase, subunit A, domain 2              3c4nB01 B:34-121,B:164-258,B:342-399                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhhh....eeee.........hhhhhh..eehhhhh...hhhhhhhhhhhhhhhhhh.....eee..eeeee........eehhhhh..hhhhhh........eeeee...eeehhhhhhhhhhhhhhh...eee...eeeee..eeeee...-------.....eeeeeeeeee.hhhhhhhhhhhhhh.....eeeeee..ee.........eeee..eeeeee..eeeee.........................hhhhhhhhhhhh..hhhhh........hhhhh.eeeeeehhhh.....eeeeee..eeeee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3c4n B  34 EEAFDIVVIGAGRmGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLT-------VVHETRQIRAGVIIVAAGAAGPALVEQGLGLHTRHGRAYRQFPRLDLLSGAQTPVLRASGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLRRELLEDLVGLmDAVPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQAEELAPGLHLLLGGPLADTLGLAAAHELAQRVSASLE 399
                                    43   |    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    |    -  |    223       233       243       253       263       273       283       293       303       313       323 |     333       343       353       363       373       383       393      
                                        47-MSE                                                                                                                                                          208     216                                                                                                          325-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3C4N)

(no "Pfam Domain" information available for 3C4N)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q9RWU4_DEIRA | Q9RWU4)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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