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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN CMQ451C FROM THE PRIMITIVE RED ALGA CYANIDIOSCHYZON MEROLAE
 
Authors :  J. G. Mccoy, E. Bitto, C. A. Bingman, G. E. Wesenberg, G. N. Phillips Jr. For Eukaryotic Structural Genomics (Cesg)
Date :  17 Jan 08  (Deposition) - 29 Jan 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Uncharacterized Protein, Red Alga, Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Cesg, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Mccoy, E. Bitto, C. A. Bingman, G. E. Wesenberg, G. N. Phillips Jr
Crystal Structure Of Uncharacterized Protein Cmq451C From The Primitive Red Alga Cyanidioschyzon Merolae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVP16
    Expression System Strain: B834 P(RARE2)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CMQ451C
    Organism Scientific: CYANIDIOSCHYZON MEROLAE
    Organism Taxid: 280699
    Strain: STRAIN 10D

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3BZB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BZB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BZB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:189
 aligned with D0VWS8_CYAM1 | D0VWS8 from UniProtKB/TrEMBL  Length:281

    Alignment length:237
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       
         D0VWS8_CYAM1    29 RVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFPDDPGDVCIRGQVHRWRLRWR 265
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bzbA00 A:29 -265 Vacc           inia Virus protein VP39                                                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......-..eeeee..-----------hhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh...----------...eeee......hhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhh.........eeeeee..--------.hhhhhhhhhh..eeeeeee...------------------.eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bzb A  29 RVERYQSPAGAP-QCSVQVQTT-----------SGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTA----------ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKmLLALPANDPTAVALVTFTH--------DLAFFRLVNADGALIAEPWLSPL------------------VHRWRLRWR 265
                                    38 | |    48 |       -   |    68        78        88        98       108       118       128         -|      148       158       168       178       188       198        |-       218       228       238         -       258       
                                      40 |      50          62                                                               128        139                                              188-MSE            207      216                   238                257        
                                        42                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:200
 aligned with D0VWS8_CYAM1 | D0VWS8 from UniProtKB/TrEMBL  Length:281

    Alignment length:237
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       
         D0VWS8_CYAM1    29 RVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFPDDPGDVCIRGQVHRWRLRWR 265
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bzbB00 B:29-265 Vacci           nia Virus protein VP39                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.........eeeee..-----------hhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh.-----------....eeee......hhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhh.........eeeeeee.......hhhhhhhhhhhhh..eeeeeeeeee..---------------.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bzb B  29 RVERYQSPAGAPLQCSVQVQTT-----------SGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREH-----------RASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKmLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQm---------------QVHRWRLRWR 265
                                    38        48 |       -   |    68        78        88        98       108       118       | -       138       148       158       168       178       188       198       208       218       228       238 |       -       258       
                                                50          62                                                             126         138                                               188-MSE                                             240-MSE         256
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

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