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(-) Description

Title :  CRYSTAL STRUCTURE OF DUF305 FRAGMENT FROM DEINOCOCCUS RADIODURANS
 
Authors :  U. A. Ramagopal, Y. Patskovsky, M. Rutter, R. Toro, K. Bain, A. J. Meyer, A. Powell, T. Gheyi, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  27 Dec 07  (Deposition) - 15 Jan 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, Y. Patskovsky, M. Rutter, R. Toro, K. Bain, A. J. Meyer, A. Powell, T. Gheyi, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Duf305 Fragment From Deinococcus Radiodurans.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN DUF305
    Atcc: 13939
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BC-PSGX4(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 22-197
    Gene: DR_1099
    Organism Scientific: DEINOCOCCUS RADIODURANS R1
    Organism Taxid: 243230
    Strain: R1 / DSM 20539 / IFO 15346 / LMG 4051 / NCIB 9279

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:62 , ARG A:75 , ARG A:79 , ARG A:178BINDING SITE FOR RESIDUE CL A 200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BT5)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:151
 aligned with Q9RVD0_DEIRA | Q9RVD0 from UniProtKB/TrEMBL  Length:197

    Alignment length:153
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176   
         Q9RVD0_DEIRA    27 PPATPQEVQFVQHMLQHHAQALDLAAPMLERSQQRTVRSLALDIQLSQREQMRQMEAMLGRWGQPPGEPISPEHARMMGMASEAEVAGLSTLPVEQAERQFLRLMIRHHQGAVAMTLPMLDAAARPEVERLARQIVVTQRGEIRTMEGVLGRL 179
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bt5A00 A:27-179  [code=1.20.1260.10, no name defined]                                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bt5 A  27 PPATPQEVQFVQHMLQHHAQALDLAAPMLERSQQRTVRSLALDIQLSQREQMRQMEAMLGRWGQPPGEPISPEHARMMGMASEAEVAGLSTLPVEQAERQFLRLMIRHHQGAVAMTLPMLD--ARPEVERLARQIVVTQRGEIRTMEGVLGRL 179
                                    36        46        56        66        76        86        96       106       116       126       136       146|  |   156       166       176   
                                                                                                                                                  147  |                             
                                                                                                                                                     150
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BT5)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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