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(-) Description

Title :  CRYSTAL STRUCTURE OF A GLYOXALASE-RELATED ENZYME FROM CLOSTRIDIUM PHYTOFERMENTANS
 
Authors :  K. N. Rao, S. K. Burley, S. Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
Date :  27 Dec 07  (Deposition) - 18 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glyoxalase Related Enzyme, Voc Superfamily, Clostridium Phytofermentans, Psi-2, Nysgxrc, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Dna-Binding, Transcription, Transcription Regulation, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. N. Rao, S. K. Burley, S. Swaminathan
Crystal Structure Of A Glyoxalase-Related Enzyme From Clostridium Phytofermentans.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYOXALASE-RELATED ENZYME, ARAC TYPE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 122-265
    Gene: CPHYDRAFT_1580
    Organism Scientific: CLOSTRIDIUM PHYTOFERMENTANS
    Organism Taxid: 357809
    Strain: ISDG

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3BT3)

(-) Sites  (0, 0)

(no "Site" information available for 3BT3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BT3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BT3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BT3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BT3)

(-) Exons   (0, 0)

(no "Exon" information available for 3BT3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with A9KJQ6_LACP7 | A9KJQ6 from UniProtKB/TrEMBL  Length:265

    Alignment length:131
                                   143       153       163       173       183       193       203       213       223       233       243       253       263 
         A9KJQ6_LACP7   134 ERGYVVRENGPVYFTKDMDKTVKWFEEILGWSGDIVARDDEGFGDYGCVFDYPSEVAVAHLTPFRGFHLFKGEPIKGVAGFMMIEGIDALHKYVKENGWDQISDIYTQPWGARECSITTTDGCILRFFESI 264
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bt3A01 A:134-207 glyoxalase-related enzyme like domain                   --------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee...eeee.hhhhhhhhhhhh...eeeeeee.....eeeeeee..........--....eeeee......eeeeeeeehhhhhhhhhhhh........eee...eeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bt3 A 134 ERGYVVRENGPVYFTKDMDKTVKWFEEILGWSGDIVARDDEGFGDYGCVFDYPSEVAVAH--PFRGFHLFKGEPIKGVAGFMMIEGIDALHKYVKENGWDQISDIYTQPWGARECSITTTDGCILRFFESI 264
                                   143       153       163       173       183       193  |    203       213       223       233       243       253       263 
                                                                                     193  |                                                                    
                                                                                        196                                                                    


Chain B from PDB  Type:PROTEIN  Length:129
 aligned with A9KJQ6_LACP7 | A9KJQ6 from UniProtKB/TrEMBL  Length:265

    Alignment length:131
                                   143       153       163       173       183       193       203       213       223       233       243       253       263 
         A9KJQ6_LACP7   134 ERGYVVRENGPVYFTKDMDKTVKWFEEILGWSGDIVARDDEGFGDYGCVFDYPSEVAVAHLTPFRGFHLFKGEPIKGVAGFMMIEGIDALHKYVKENGWDQISDIYTQPWGARECSITTTDGCILRFFESI 264
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bt3B01 B:134-207 glyoxalase-related enzyme like domain                   --------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee...eeee.hhhhhhhhhhhhh..eeeeeee.....eeeeeee..hhhhhhh.--....eeeee......eeeeeeeehhhhhhhhhhhh........eee...eeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bt3 B 134 ERGYVVRENGPVYFTKDMDKTVKWFEEILGWSGDIVARDDEGFGDYGCVFDYPSEVAVAH--PFRGFHLFKGEPIKGVAGFMMIEGIDALHKYVKENGWDQISDIYTQPWGARECSITTTDGCILRFFESI 264
                                   143       153       163       173       183       193  |    203       213       223       233       243       253       263 
                                                                                     193  |                                                                    
                                                                                        196
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BT3)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BT3)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (A9KJQ6_LACP7 | A9KJQ6)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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 Related Entries

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(-) Related Entries Specified in the PDB File

2qh0 CRYSTAL STRUCTURE OF A GLYOXALASE FROM CLOSTRIDIUM ACETOBUTYLICUM
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3bqx HIGH RESOLUTION CRYSTAL STRUCTURE OF A GLYOXALASE-RELATED ENZYME FROM FULVIMARINA PELAGI