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(-) Description

Title :  CRYSTAL STRUCTURE OF A CONSERVED PROTEIN OF UNKNOWN FUNCTION FROM METHANOBACTERIUM THERMOAUTOTROPHICUM
 
Authors :  R. Zhang, E. Evdokimova, M. Kudritska, A. Savchenko, A. M. Edwards, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  21 Dec 07  (Deposition) - 19 Feb 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Conserved Protein, Methanobacterium Thermoautotrophicum, Structural Genomics, Mcsg, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, E. Evdokimova, M. Kudritska, A. Savchenko, A. M. Edwards, A. Joachimiak
The Crystal Structure Of A Conserved Protein Of Unknown Function From Methanobacterium Thermoautotrophicum.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED PROTEIN OF UNKNOWN FUNCTION
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PDM68
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: METHANOTHERMOBACTER THERMAUTOTROPHICUS
    Organism Taxid: 187420
    Strain: DELTA H

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
1MSE13Mod. Amino AcidSELENOMETHIONINE
2PO43Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1MSE13Mod. Amino AcidSELENOMETHIONINE
2PO43Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 32)
No.NameCountTypeFull Name
1MSE26Mod. Amino AcidSELENOMETHIONINE
2PO46Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:109 , SER A:110 , PRO A:129 , HIS A:130 , HOH A:175 , HOH A:176 , HOH A:179 , HOH A:264 , GLY B:20 , ASP B:21BINDING SITE FOR RESIDUE PO4 A 157
2AC2SOFTWAREASN A:43 , LYS A:48 , LYS A:84 , ARG A:100 , GLY A:101 , HOH A:262BINDING SITE FOR RESIDUE PO4 A 158
3AC3SOFTWAREGLY A:20 , ASP A:21 , GLY B:109 , SER B:110 , PRO B:129 , HIS B:130 , HOH B:179 , HOH B:214 , HOH B:237 , HOH B:244 , HOH B:247BINDING SITE FOR RESIDUE PO4 B 157

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BRC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BRC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BRC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BRC)

(-) Exons   (0, 0)

(no "Exon" information available for 3BRC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:155
 aligned with O27213_METTH | O27213 from UniProtKB/TrEMBL  Length:156

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
         O27213_METTH     1 MLEDLIGKAYLESAEDRRRGDRSEEVEAIRKYIRSARRTVVPNWNAEKVDAINDVLRSFNLREAEHLQFNTNWADLTRMPAVTKALMALDISGADLVIARGRLGVPGSGSLLVIMDSRGRLLSAAMSPPHVIHSMEVREAVRSEMTHALERIGFK 155
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -3brcA01 A:2-35 Helix hairpin bin  3brcA02 A:36-155 Diol Dehydratase; Chain B                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhh.....ee....hhhhhhh.hhhhhhhhhhhhhhh..eeeeeee.......eeeeeee....eeeeeee........hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3brc A   1 mLEDLIGKAYLESAEDRRRGDRSEEVEAIRKYIRSARRTVVPNWNAEKVDAINDVLRSFNLREAEHLQFNTNWADLTRmPAVTKALmALDISGADLVIARGRLGVPGSGSLLVImDSRGRLLSAAmSPPHVIHSmEVREAVRSEmTHALERIGFK 155
                            |       10        20        30        40        50        60        70        80      | 90       100       110    |  120     | 130    |  140    |  150     
                            |                                                                            79-MSE  87-MSE                     115-MSE    126-MSE  135-MSE   145-MSE      
                            1-MSE                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:155
 aligned with O27213_METTH | O27213 from UniProtKB/TrEMBL  Length:156

    Alignment length:155
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     
         O27213_METTH     2 LEDLIGKAYLESAEDRRRGDRSEEVEAIRKYIRSARRTVVPNWNAEKVDAINDVLRSFNLREAEHLQFNTNWADLTRMPAVTKALMALDISGADLVIARGRLGVPGSGSLLVIMDSRGRLLSAAMSPPHVIHSMEVREAVRSEMTHALERIGFKR 156
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3brcB01 B:2-35 Helix hairpin bin  3brcB02 B:36-156 Diol Dehydratase; Chain B                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhh.....ee....hhhhhhh.hhhhhhhhhhhhhhh..eeeeeee.......eeeeeee....eeeeeee........hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3brc B   2 LEDLIGKAYLESAEDRRRGDRSEEVEAIRKYIRSARRTVVPNWNAEKVDAINDVLRSFNLREAEHLQFNTNWADLTRmPAVTKALmALDISGADLVIARGRLGVPGSGSLLVImDSRGRLLSAAmSPPHVIHSmEVREAVRSEmTHALERIGFKR 156
                                    11        21        31        41        51        61        71       |81     |  91       101       111   |   121    |  131   |   141   |   151     
                                                                                                        79-MSE  87-MSE                     115-MSE    126-MSE  135-MSE   145-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BRC)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BRC)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3BRC)

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