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(-) Description

Title :  SAM DOMAIN OF DIACYLGLYCEROL KINASE DELTA1 (E35G)
 
Authors :  M. J. Knight, J. U. Bowie, M. R. Sawaya
Date :  19 Dec 07  (Deposition) - 25 Mar 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (3x)
Biol. Unit 2:  C,F  (3x)
Biol. Unit 3:  D,E  (3x)
Biol. Unit 4:  A  (1x)
Biol. Unit 5:  B  (1x)
Biol. Unit 6:  C  (1x)
Biol. Unit 7:  D  (1x)
Biol. Unit 8:  E  (1x)
Biol. Unit 9:  F  (1x)
Keywords :  Sam Domain, Polymerization Domain, Alternative Splicing, Cytoplasm, Kinase, Membrane, Metal-Binding, Phorbol-Ester Binding, Phosphoprotein, Transferase, Zinc, Zinc-Finger (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. T. Harada, M. J. Knight, S. Imai, F. Qiao, R. Ramachander, M. R. Sawaya, M. Gingery, F. Sakane, J. U. Bowie
Regulation Of Enzyme Localization By Polymerization: Polymer Formation By The Sam Domain Of Diacylglycerol Kinase Delta1
Structure V. 16 380 2008
PubMed-ID: 18334213  |  Reference-DOI: 10.1016/J.STR.2007.12.017
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DIACYLGLYCEROL KINASE DELTA
    ChainsA, B, C, D, E, F
    EC Number2.7.1.107
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Cell LineBL21 (DE3)
    Expression System PlasmidPET-3C
    Expression System StrainPLYSES
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentSAM DOMAIN
    GeneDGKD, KIAA0145
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDIGLYCERIDE KINASE DELTA, DGK-DELTA, DAG KINASE DELTA, 130 KDA DIACYLGLYCEROL KINASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (3x)AB    
Biological Unit 2 (3x)  C  F
Biological Unit 3 (3x)   DE 
Biological Unit 4 (1x)A     
Biological Unit 5 (1x) B    
Biological Unit 6 (1x)  C   
Biological Unit 7 (1x)   D  
Biological Unit 8 (1x)    E 
Biological Unit 9 (1x)     F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3BQ7)

(-) Sites  (0, 0)

(no "Site" information available for 3BQ7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BQ7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BQ7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BQ7)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  6A:5-67
B:5-67
C:5-68
D:5-68
E:5-67
F:5-67
Biological Unit 1 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  6A:5-67
B:5-67
-
-
-
-
Biological Unit 2 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  6-
-
C:5-68
-
-
F:5-67
Biological Unit 3 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  6-
-
-
D:5-68
E:5-67
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  1A:5-67
-
-
-
-
-
Biological Unit 5 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  1-
B:5-67
-
-
-
-
Biological Unit 6 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  1-
-
C:5-68
-
-
-
Biological Unit 7 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  1-
-
-
D:5-68
-
-
Biological Unit 8 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  1-
-
-
-
E:5-67
-
Biological Unit 9 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SAM_DOMAINPS50105 SAM domain profile.DGKD_HUMAN1145-1208
 
 
 
 
 
  1-
-
-
-
-
F:5-67

(-) Exons   (3, 18)

Asymmetric Unit (3, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002640571aENSE00001123844chr2:234263153-234263320168DGKD_HUMAN1-52520--
1.4bENST000002640574bENSE00001656899chr2:234296903-234297013111DGKD_HUMAN53-89370--
1.5ENST000002640575ENSE00001663062chr2:234299049-23429912981DGKD_HUMAN90-116270--
1.8aENST000002640578aENSE00000403200chr2:234343026-234343130105DGKD_HUMAN117-151350--
1.9bENST000002640579bENSE00000786932chr2:234343415-234343547133DGKD_HUMAN152-196450--
1.10bENST0000026405710bENSE00000786931chr2:234344464-234344570107DGKD_HUMAN196-231360--
1.11ENST0000026405711ENSE00000786930chr2:234344962-234345087126DGKD_HUMAN232-273420--
1.12ENST0000026405712ENSE00000403204chr2:234346023-234346125103DGKD_HUMAN274-308350--
1.13aENST0000026405713aENSE00000786928chr2:234346863-234347025163DGKD_HUMAN308-362550--
1.14aENST0000026405714aENSE00000786927chr2:234350533-234350641109DGKD_HUMAN362-398370--
1.15ENST0000026405715ENSE00000403207chr2:234354269-234354408140DGKD_HUMAN399-445470--
1.16ENST0000026405716ENSE00000786925chr2:234355358-23435544285DGKD_HUMAN445-473290--
1.18bENST0000026405718bENSE00000403209chr2:234356733-23435682795DGKD_HUMAN474-505320--
1.19ENST0000026405719ENSE00000403210chr2:234356922-234357021100DGKD_HUMAN505-538340--
1.20cENST0000026405720cENSE00000403211chr2:234357749-234358022274DGKD_HUMAN539-630920--
1.21ENST0000026405721ENSE00000403212chr2:234358628-234358777150DGKD_HUMAN630-680510--
1.22ENST0000026405722ENSE00000786920chr2:234359568-234359696129DGKD_HUMAN680-723440--
1.23ENST0000026405723ENSE00000403214chr2:234360610-23436070697DGKD_HUMAN723-755330--
1.25ENST0000026405725ENSE00002197667chr2:234363409-234363519111DGKD_HUMAN755-792380--
1.26ENST0000026405726ENSE00001711050chr2:234365545-23436564197DGKD_HUMAN792-824330--
1.27aENST0000026405727aENSE00001780674chr2:234365867-234365974108DGKD_HUMAN825-860360--
1.28bENST0000026405728bENSE00001677254chr2:234366930-234367043114DGKD_HUMAN861-898380--
1.29bENST0000026405729bENSE00001758296chr2:234368403-234368537135DGKD_HUMAN899-943450--
1.30ENST0000026405730ENSE00001604181chr2:234368840-234368991152DGKD_HUMAN944-994510--
1.31ENST0000026405731ENSE00001593353chr2:234370994-234371105112DGKD_HUMAN994-1031380--
1.32ENST0000026405732ENSE00001681592chr2:234371289-23437138193DGKD_HUMAN1032-1062310--
1.33bENST0000026405733bENSE00001695731chr2:234372810-234372929120DGKD_HUMAN1063-1102400--
1.34bENST0000026405734bENSE00001756067chr2:234375732-234375849118DGKD_HUMAN1103-1142406A:0-2
B:1-2
C:-1-2 (gaps)
D:1-2
E:0-2
F:1-2
3
2
31
2
3
2
1.35ENST0000026405735ENSE00001737904chr2:234377069-234377199131DGKD_HUMAN1142-1185446A:2-45
B:2-45
C:2-45
D:2-45
E:2-45
F:2-45
44
44
44
44
44
44
1.36bENST0000026405736bENSE00001923484chr2:234378017-2343807462730DGKD_HUMAN1186-1214296A:46-67
B:46-67
C:46-68
D:46-68
E:46-67
F:46-67
22
22
23
23
22
22

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:68
 aligned with DGKD_HUMAN | Q16760 from UniProtKB/Swiss-Prot  Length:1214

    Alignment length:68
                                  1149      1159      1169      1179      1189      1199        
          DGKD_HUMAN   1140 APVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRILCGIKELSR 1207
               SCOP domains d3bq7a_ A: automated matches                                         SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----SAM_DOMAIN  PDB: A:5-67 UniProt: 1145-1208                      PROSITE
           Transcript 1 (1) 1.3-------------------------------------------Exon 1.36b             Transcript 1 (1)
           Transcript 1 (2) --Exon 1.35  PDB: A:2-45 UniProt: 1142-1185   ---------------------- Transcript 1 (2)
                3bq7 A    0 RPVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSR   67
                                     9        19        29        39        49        59        

Chain B from PDB  Type:PROTEIN  Length:67
 aligned with DGKD_HUMAN | Q16760 from UniProtKB/Swiss-Prot  Length:1214

    Alignment length:67
                                  1150      1160      1170      1180      1190      1200       
          DGKD_HUMAN   1141 PVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRILCGIKELSR 1207
               SCOP domains d3bq7b_ B: automated matches                                        SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----SAM_DOMAIN  PDB: B:5-67 UniProt: 1145-1208                      PROSITE
           Transcript 1 (1) 1.-------------------------------------------Exon 1.36b             Transcript 1 (1)
           Transcript 1 (2) -Exon 1.35  PDB: B:2-45 UniProt: 1142-1185   ---------------------- Transcript 1 (2)
                3bq7 B    1 PVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSR   67
                                    10        20        30        40        50        60       

Chain C from PDB  Type:PROTEIN  Length:70
 aligned with DGKD_HUMAN | Q16760 from UniProtKB/Swiss-Prot  Length:1214

    Alignment length:97
                                  1121      1131      1141      1151      1161      1171      1181      1191      1201       
          DGKD_HUMAN   1112 SRSGKFRLVTKFKKEKNNKNKEAHSSLGAPVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRILCGIKELSRS 1208
               SCOP domains d3                           bq7c_ C: automated matches                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..---------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------SAM_DOMAIN  PDB: C:5-68 UniProt: 1145-1208                       PROSITE
           Transcript 1 (1) Exon 1.34b  PDB: C:-1-2 (gaps) -------------------------------------------Exon 1.36b  PDB: C:46-6 Transcript 1 (1)
           Transcript 1 (2) ------------------------------Exon 1.35  PDB: C:2-45 UniProt: 1142-1185   ----------------------- Transcript 1 (2)
                3bq7 C   -1 TR---------------------------PVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRS   68
                             |       -         -         1        11        21        31        41        51        61       
                             0                           1                                                                   

Chain D from PDB  Type:PROTEIN  Length:68
 aligned with DGKD_HUMAN | Q16760 from UniProtKB/Swiss-Prot  Length:1214

    Alignment length:68
                                  1150      1160      1170      1180      1190      1200        
          DGKD_HUMAN   1141 PVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRILCGIKELSRS 1208
               SCOP domains d3bq7d_ D: automated matches                                         SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh.hhhhhhhhhhh..hhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----SAM_DOMAIN  PDB: D:5-68 UniProt: 1145-1208                       PROSITE
           Transcript 1 (1) 1.-------------------------------------------Exon 1.36b  PDB: D:46-6 Transcript 1 (1)
           Transcript 1 (2) -Exon 1.35  PDB: D:2-45 UniProt: 1142-1185   ----------------------- Transcript 1 (2)
                3bq7 D    1 PVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRS   68
                                    10        20        30        40        50        60        

Chain E from PDB  Type:PROTEIN  Length:68
 aligned with DGKD_HUMAN | Q16760 from UniProtKB/Swiss-Prot  Length:1214

    Alignment length:68
                                  1149      1159      1169      1179      1189      1199        
          DGKD_HUMAN   1140 APVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRILCGIKELSR 1207
               SCOP domains d3bq7e_ E: automated matches                                         SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----SAM_DOMAIN  PDB: E:5-67 UniProt: 1145-1208                      PROSITE
           Transcript 1 (1) 1.3-------------------------------------------Exon 1.36b             Transcript 1 (1)
           Transcript 1 (2) --Exon 1.35  PDB: E:2-45 UniProt: 1142-1185   ---------------------- Transcript 1 (2)
                3bq7 E    0 RPVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSR   67
                                     9        19        29        39        49        59        

Chain F from PDB  Type:PROTEIN  Length:67
 aligned with DGKD_HUMAN | Q16760 from UniProtKB/Swiss-Prot  Length:1214

    Alignment length:67
                                  1150      1160      1170      1180      1190      1200       
          DGKD_HUMAN   1141 PVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRILCGIKELSR 1207
               SCOP domains d3bq7f_ F: automated matches                                        SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----SAM_DOMAIN  PDB: F:5-67 UniProt: 1145-1208                      PROSITE
           Transcript 1 (1) 1.-------------------------------------------Exon 1.36b             Transcript 1 (1)
           Transcript 1 (2) -Exon 1.35  PDB: F:2-45 UniProt: 1142-1185   ---------------------- Transcript 1 (2)
                3bq7 F    1 PVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSR   67
                                    10        20        30        40        50        60       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3BQ7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BQ7)

(-) Gene Ontology  (28, 28)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (DGKD_HUMAN | Q16760)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0019992    diacylglycerol binding    Interacting selectively and non-covalently with diacylglycerol, a diester of glycerol and two fatty acids.
    GO:0004143    diacylglycerol kinase activity    Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol-3-phosphate.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016049    cell growth    The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
    GO:0046339    diacylglycerol metabolic process    The chemical reactions and pathways involving diacylglycerol, a glyceride in which any two of the R groups (positions not specified) are acyl groups while the remaining R group can be either H or an alkyl group.
    GO:0006897    endocytosis    A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
    GO:0007173    epidermal growth factor receptor signaling pathway    A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor EGFR (ERBB1) on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0051260    protein homooligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
    GO:0007205    protein kinase C-activating G-protein coupled receptor signaling pathway    The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of protein kinase C (PKC). PKC is activated by second messengers including diacylglycerol (DAG).
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0010033    response to organic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.
    GO:0019932    second-messenger-mediated signaling    Any intracellular signal transduction in which the signal is passed on within the cell via a second messenger; a small molecule or ion that can be quickly generated or released from intracellular stores, and can diffuse within the cell. Second-messenger signaling includes production or release of the second messenger, and effectors downstream of the second messenger that further transmit the signal within the cell.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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