Chain A from PDB Type:PROTEIN Length:131
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9a_ A: AKV capsid SCOP domains
CATH domains 3bp9A00 A:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.......ee...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 A 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain A from PDB Type:PROTEIN Length:131
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9a_ A: AKV capsid SCOP domains
CATH domains 3bp9A00 A:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.......ee...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 A 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain B from PDB Type:PROTEIN Length:126
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp 9b_ B: AKV capsid SCOP domains
CATH domains 3bp9 B00 B:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.-----.ee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 B 1 PLRL-----LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
| 10 20 30 40 50 60 70 80 90 100 110 120 130
4 10
Chain B from PDB Type:PROTEIN Length:126
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp 9b_ B: AKV capsid SCOP domains
CATH domains 3bp9 B00 B:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.-----.ee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 B 1 PLRL-----LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
| 10 20 30 40 50 60 70 80 90 100 110 120 130
4 10
Chain C from PDB Type:PROTEIN Length:131
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9c_ C: AKV capsid SCOP domains
CATH domains 3bp9C00 C:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 C 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain C from PDB Type:PROTEIN Length:131
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9c_ C: AKV capsid SCOP domains
CATH domains 3bp9C00 C:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 C 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain D from PDB Type:PROTEIN Length:131
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9d_ D: AKV capsid SCOP domains
CATH domains 3bp9D00 D:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 D 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain D from PDB Type:PROTEIN Length:131
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9d_ D: AKV capsid SCOP domains
CATH domains 3bp9D00 D:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 D 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain E from PDB Type:PROTEIN Length:132
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9e_ E: AKV capsid SCOP domains
CATH domains 3bp9E00 E:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 E 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain E from PDB Type:PROTEIN Length:132
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9e_ E: AKV capsid SCOP domains
CATH domains 3bp9E00 E:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 E 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain F from PDB Type:PROTEIN Length:131
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9f_ F: AKV capsid SCOP domains
CATH domains 3bp9F00 F:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 F 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain F from PDB Type:PROTEIN Length:131
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9f_ F: AKV capsid SCOP domains
CATH domains 3bp9F00 F:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 F 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain G from PDB Type:PROTEIN Length:130
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9g_ G: AKV capsid SCOP domains
CATH domains 3bp9G00 G:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.....-.ee...hhhhhhhhhhh.......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 G 1 PLRLGGNG-LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
|10 20 30 40 50 60 70 80 90 100 110 120 130
8 |
10
Chain G from PDB Type:PROTEIN Length:130
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9g_ G: AKV capsid SCOP domains
CATH domains 3bp9G00 G:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.....-.ee...hhhhhhhhhhh.......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 G 1 PLRLGGNG-LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
|10 20 30 40 50 60 70 80 90 100 110 120 130
8 |
10
Chain H from PDB Type:PROTEIN Length:128
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp 9h_ H: AKV capsid SCOP domains
CATH domains 3bp9 H00 H:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.---...ee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 H 1 PLRL---GQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
| |10 20 30 40 50 60 70 80 90 100 110 120 130
4 8
Chain H from PDB Type:PROTEIN Length:128
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp 9h_ H: AKV capsid SCOP domains
CATH domains 3bp9 H00 H:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.---...ee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 H 1 PLRL---GQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
| |10 20 30 40 50 60 70 80 90 100 110 120 130
4 8
Chain I from PDB Type:PROTEIN Length:131
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9i_ I: AKV capsid SCOP domains
CATH domains 3bp9I00 I:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 I 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain I from PDB Type:PROTEIN Length:131
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9i_ I: AKV capsid SCOP domains
CATH domains 3bp9I00 I:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 I 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain J from PDB Type:PROTEIN Length:132
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9j_ J: AKV capsid SCOP domains
CATH domains 3bp9J00 J:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 J 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain J from PDB Type:PROTEIN Length:132
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9j_ J: AKV capsid SCOP domains
CATH domains 3bp9J00 J:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 J 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain K from PDB Type:PROTEIN Length:131
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9k_ K: AKV capsid SCOP domains
CATH domains 3bp9K00 K:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 K 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain K from PDB Type:PROTEIN Length:131
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9k_ K: AKV capsid SCOP domains
CATH domains 3bp9K00 K:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 K 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain L from PDB Type:PROTEIN Length:131
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9l_ L: AKV capsid SCOP domains
CATH domains 3bp9L00 L:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 L 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain L from PDB Type:PROTEIN Length:131
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9l_ L: AKV capsid SCOP domains
CATH domains 3bp9L00 L:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 L 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain M from PDB Type:PROTEIN Length:132
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9m_ M: AKV capsid SCOP domains
CATH domains 3bp9M00 M:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 M 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain M from PDB Type:PROTEIN Length:132
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9m_ M: AKV capsid SCOP domains
CATH domains 3bp9M00 M:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 M 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain N from PDB Type:PROTEIN Length:128
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9n_ N: AKV capsid SCOP domains
CATH domains 3bp9N00 N:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..----....hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 N 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR----RPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 | 90 100 110 120 130
80 85
Chain N from PDB Type:PROTEIN Length:128
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9n_ N: AKV capsid SCOP domains
CATH domains 3bp9N00 N:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..----....hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 N 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR----RPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 | 90 100 110 120 130
80 85
Chain O from PDB Type:PROTEIN Length:118
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp 9o_ O: AKV capsid SCOP domains
CATH domains 3bp9 O00 O:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.-----.ee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.--------.hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 O 1 PLRL-----LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAV--------QLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
| 10 20 30 40 50 60 70 |- |90 100 110 120 130
4 10 79 88
Chain O from PDB Type:PROTEIN Length:118
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp 9o_ O: AKV capsid SCOP domains
CATH domains 3bp9 O00 O:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.-----.ee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.--------.hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 O 1 PLRL-----LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAV--------QLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
| 10 20 30 40 50 60 70 |- |90 100 110 120 130
4 10 79 88
Chain P from PDB Type:PROTEIN Length:121
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9 p_ P: AKV capsid SCOP domains
CATH domains 3bp9P 00 P:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee..----.ee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..------..hhhhhhh............hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 P 1 PLRLG----LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR------TQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
| 10 20 30 40 50 60 70 80 | 90 100 110 120 130
5 10 80 87
Chain P from PDB Type:PROTEIN Length:121
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9 p_ P: AKV capsid SCOP domains
CATH domains 3bp9P 00 P:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee..----.ee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..------..hhhhhhh............hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 P 1 PLRLG----LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR------TQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
| 10 20 30 40 50 60 70 80 | 90 100 110 120 130
5 10 80 87
Chain Q from PDB Type:PROTEIN Length:125
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9q_ Q: AKV capsid SCOP domains
CATH domains 3bp9Q00 Q:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..------..hhhhhhh............hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 Q 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR------TQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 | 90 100 110 120 130
80 87
Chain Q from PDB Type:PROTEIN Length:125
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9q_ Q: AKV capsid SCOP domains
CATH domains 3bp9Q00 Q:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..------..hhhhhhh............hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 Q 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR------TQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 | 90 100 110 120 130
80 87
Chain R from PDB Type:PROTEIN Length:123
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9r_ R: AKV capsid SCOP domains
CATH domains 3bp9R00 R:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.--------.hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 R 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAV--------QLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 |- |90 100 110 120 130
79 88
Chain R from PDB Type:PROTEIN Length:123
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9r_ R: AKV capsid SCOP domains
CATH domains 3bp9R00 R:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.--------.hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 R 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAV--------QLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 |- |90 100 110 120 130
79 88
Chain S from PDB Type:PROTEIN Length:132
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9s_ S: AKV capsid SCOP domains
CATH domains 3bp9S00 S:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 S 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain S from PDB Type:PROTEIN Length:132
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9s_ S: AKV capsid SCOP domains
CATH domains 3bp9S00 S:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 S 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain T from PDB Type:PROTEIN Length:132
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9t_ T: AKV capsid SCOP domains
CATH domains 3bp9T00 T:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 T 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain T from PDB Type:PROTEIN Length:132
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9t_ T: AKV capsid SCOP domains
CATH domains 3bp9T00 T:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 T 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
10 20 30 40 50 60 70 80 90 100 110 120 130
Chain U from PDB Type:PROTEIN Length:120
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9u_ U: AKV capsid SCOP domains
CATH domains 3bp9U00 U:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..-----------hhhhh...........hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 U 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR-----------EVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 - | 100 110 120 130
80 92
Chain U from PDB Type:PROTEIN Length:120
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9u_ U: AKV capsid SCOP domains
CATH domains 3bp9U00 U:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..-----------hhhhh...........hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 U 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR-----------EVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 80 - | 100 110 120 130
80 92
Chain V from PDB Type:PROTEIN Length:119
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9v_ V: AKV capsid SCOP domains
CATH domains 3bp9V00 V:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..------------hhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 V 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAV------------EVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 |- - | 100 110 120 130
79 92
Chain V from PDB Type:PROTEIN Length:119
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9v_ V: AKV capsid SCOP domains
CATH domains 3bp9V00 V:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..------------hhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 V 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAV------------EVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 |- - | 100 110 120 130
79 92
Chain X from PDB Type:PROTEIN Length:124
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9 x_ X: AKV capsid SCOP domains
CATH domains 3bp9X 00 X:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.-...eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...-------.hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 X 1 PLRLG-NGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR-------QLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
| | 10 20 30 40 50 60 70 80 |90 100 110 120 130
5 7 80 88
Chain X from PDB Type:PROTEIN Length:124
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:132
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 346
SCOP domains d3bp9 x_ X: AKV capsid SCOP domains
CATH domains 3bp9X 00 X:1-132 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eee.-...eee...hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...-------.hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bp9 X 1 PLRLG-NGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVR-------QLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRS 132
| | 10 20 30 40 50 60 70 80 |90 100 110 120 130
5 7 80 88
Chain Y from PDB Type:PROTEIN Length:124
aligned with GAG_MLVAV | P03336 from UniProtKB/Swiss-Prot Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
GAG_MLVAV 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9y_ Y: AKV capsid SCOP domains
CATH domains 3bp9Y00 Y:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.-------..hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 Y 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAV-------TQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 |- | 90 100 110 120 130
79 87
Chain Y from PDB Type:PROTEIN Length:124
aligned with Q9WHV6_9GAMR | Q9WHV6 from UniProtKB/TrEMBL Length:537
Alignment length:131
224 234 244 254 264 274 284 294 304 314 324 334 344
Q9WHV6_9GAMR 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 345
SCOP domains d3bp9y_ Y: AKV capsid SCOP domains
CATH domains 3bp9Y00 Y:1-131 Human Immunodeficiency Virus Type 1 Capsid Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee.....eee...hhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.-------..hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3bp9 Y 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAV-------TQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR 131
10 20 30 40 50 60 70 |- | 90 100 110 120 130
79 87
| Legend: |
|
→ Mismatch |
(orange background) |
| |
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
| |
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
| |
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
| |
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
Description
