3BNG - JenaLib

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:43 , GLU A:45 , TYR A:56 , HOH A:670 , HOH A:792 , HOH A:797 , HOH A:825	BINDING SITE FOR RESIDUE ACT A 3
02	AC2	SOFTWARE	ALA A:192 , ALA A:193 , SER A:243 , HOH A:882	BINDING SITE FOR RESIDUE ACT A 4
03	AC3	SOFTWARE	ASN A:72 , HOH A:799 , HOH A:890 , HOH A:1149	BINDING SITE FOR RESIDUE ACT A 5
04	AC4	SOFTWARE	THR A:285 , GLY A:286 , ILE A:287 , ARG A:347 , ALA A:406 , PRO A:407 , GLU A:408 , GLU A:409 , HOH A:835 , HOH A:985 , HOH A:1141	BINDING SITE FOR RESIDUE SO4 A 1
05	AC5	SOFTWARE	GLY A:306 , SER A:333 , GLU A:334 , HOH A:1044 , HOH A:1049 , HOH A:1076 , HOH A:1091	BINDING SITE FOR RESIDUE SO4 A 2
06	AC6	SOFTWARE	GLU A:217 , PHE A:218 , LYS A:274 , GLN A:276 , HOH A:601 , HOH A:715	BINDING SITE FOR RESIDUE CA A 508
07	AC7	SOFTWARE	GLU A:52 , ASP A:444 , HOH A:670 , HOH A:792 , HOH A:793 , HOH A:794 , HOH A:797	BINDING SITE FOR RESIDUE Y1 A 509
08	AC8	SOFTWARE	PRO A:99 , HOH A:677 , HOH A:726 , HOH A:800 , HOH A:1078	BINDING SITE FOR RESIDUE Y1 A 510
09	AC9	SOFTWARE	GLN A:304 , ASP A:323 , GLU A:334 , HOH A:1076	BINDING SITE FOR RESIDUE Y1 A 511
10	BC1	SOFTWARE	GLU A:408	BINDING SITE FOR RESIDUE Y1 A 512
11	BC2	SOFTWARE	TYR A:96 , ASN A:97 , PRO A:99 , ASP A:108 , ASN A:109 , THR A:112 , ARG A:114 , THR A:115 , LEU A:126 , CYS A:130 , CYS A:133 , LYS A:134 , CYS A:214 , HIS A:215 , PHE A:218 , PHE A:220 , HIS A:277 , ALA A:398 , HIS A:400 , HOH A:547 , HOH A:550 , HOH A:569 , HOH A:571 , HOH A:575 , HOH A:617 , HOH A:1047	BINDING SITE FOR RESIDUE HEM A 513
12	BC3	SOFTWARE	TYR A:57 , GLN A:60 , PHE A:61 , TRP A:64 , GLY A:167 , CYS A:168 , CYS A:171 , HIS A:172 , LEU A:179 , HIS A:203 , ARG A:207 , MET A:300 , TYR A:302 , TYR A:310 , SER A:311 , HIS A:313 , HOH A:805 , HOH A:822 , HOH A:831	BINDING SITE FOR RESIDUE HEM A 514
13	BC4	SOFTWARE	SER A:70 , PRO A:99 , ARG A:100 , HIS A:102 , TYR A:104 , ALA A:105 , ASP A:108 , CYS A:133 , LYS A:134 , ILE A:166 , CYS A:211 , CYS A:214 , HIS A:215 , HIS A:299 , GLY A:316 , HOH A:546 , HOH A:677 , HOH A:726 , HOH A:1149	BINDING SITE FOR RESIDUE HEM A 515
14	BC5	SOFTWARE	PRO A:99 , HIS A:215 , TYR A:283 , HIS A:288 , SER A:294 , CYS A:295 , CYS A:298 , HIS A:299 , ASN A:317 , PRO A:318 , HIS A:400 , GLY A:401 , PHE A:403 , PHE A:404 , HIS A:405 , HOH A:677 , HOH A:801 , HOH A:1024 , HOH A:1078	BINDING SITE FOR RESIDUE HEM A 516
15	BC6	SOFTWARE	ILE A:287 , HIS A:288 , LYS A:291 , PRO A:318 , SER A:325 , CYS A:326 , CYS A:329 , HIS A:330 , GLU A:332 , ILE A:340 , LYS A:344 , PHE A:404 , GLU A:408 , HOH A:727 , HOH A:1048 , HOH A:1050 , HOH A:1089	BINDING SITE FOR RESIDUE HEM A 517

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:471
 aligned with NRFA_WOLSU | Q9S1E5 from UniProtKB/Swiss-Prot  Length:507

    Alignment length:471
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506 
           NRFA_WOLSU    37 KTAHSQGIEGKAMSEEWARYYPRQFDSWKKTKESDNITDMLKEKPALVVAWAGYPFSKDYNAPRGHYYALQDNINTLRTGAPVDGKTGPLPSACWTCKSPDVPRIIEQDGELEYFTGKWAKYGDEIVNTIGCYNCHDDKSAELKSKVPYLDRGLSAAGFKTFAESTHQEKRSLVCAQCHVEYYFKKTEWKDDKGVDKTAMVVTLPWSKGISTEQMEAYYDEINFADWTHGISKTPMLKAQHPDWELYKTGIHGQKGVSCADCHMPYTQEGAVKYSDHKVGNPLDNMDKSCMNCHRESEQKLKDIVKQKFERKEFLQDIAFDNIGKAHLETGKAMELGATDAELKEIRTHIRHAQWRADMAIAGHGSFFHAPEEVLRLLASGNEEAQKARIKLVKVLAKYGAIDYVAPDFETKEKAQKLAKVDMEAFIAEKLKFKQTLEQEWKKQAIAKGRLNPESLKGVDEKSSYYDKTKK 507
               SCOP domains d3bnga_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhhh..........hhhhhh...hhhhhhhhhhhhhhhh..hhhhhh.......hhhhhh...........hhhhhhhhhh........hhhhhhhhhhhh.....eeeeeeee.....eeeeeeee.......hhhhhhhhhhhh....ee......ee.....hhhhhhh.hhhhhhh.hhhhhhh.eeee..eeee.....hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------MULTIHEME_CYTC  PDB: A:163-335 UniProt: 163-335                                                                                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bng A  37 KTAHSQGIEGKAMSEEWARYYPRQFDSWKKTKESDNITDMLKEKPALVVAWAGYPFSKDYNAPRGHYYALQDNINTLRTGAPVDGKTGPLPSACWTCKSPDVPRIIEQDGELEYFTGKWAKYGDEIVNTIGCYNCHDDKSAELKSKVPYLDRGLSAAGFKTFAESTHQEKRSLVCAQCHVEFYFKKTEWKDDKGVDKTAMVVTLPWSKGISTEQMEAYYDEINFADWTHGISKTPMLKAQHPDWELYKTGIHGQKGVSCADCHMPYTQEGAVKYSDHKVGNPLDNMDKSCMNCHRESEQKLKDIVKQKFERKEFLQDIAFDNIGKAHLETGKAMELGATDAELKEIRTHIRHAQWRADMAIAGHGSFFHAPEEVLRLLASGNEEAQKARIKLVKVLAKYGAIDYVAPDFETKEKAQKLAKVDMEAFIAEKLKFKQTLEQEWKKQAIAKGRLNPESLKGVDEKSSYYDKTKK 507
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

Asymmetric Unit(hide GO term definitions)

Chain A (NRFA_WOLSU | Q9S1E5)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0042279	nitrite reductase (cytochrome, ammonia-forming) activity	Catalysis of the reaction: NH3 + 2 H2O + 6 ferricytochrome c = nitrite + 6 ferrocytochrome c + 7 H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0042128	nitrate assimilation	The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances.
	GO:0006807	nitrogen compound metabolic process	The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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	3bng
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	1.7.2.2
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 15)

Sites (15, 15)