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(-) Description

Title :  CRYSTAL STRUCTURE OF D-ALANYL-LIPOTEICHOIC ACID SYNTHETASE FROM STREPTOCOCCUS PNEUMONIAE R6
 
Authors :  Y. Patskovsky, V. Sridhar, J. B. Bonanno, D. Smith, M. Rutter, M. Iizuka K. Bain, T. Gheyi, S. R. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  12 Dec 07  (Deposition) - 25 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.24
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)
Keywords :  Structural Genomics, D-Alanyl-Lipoteichoic Acid Biosynthesis, Protein Structure Initiative, Psi-2, New York Sgx Research Center For Structural Genomics, Nysgxrc, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, V. Sridhar, J. B. Bonanno, D. Smith, M. Rutter, M. Iizuka, J. Koss, K. Bain, T. Gheyi, S. R. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Probable D-Alanyl-Lipoteichoic Acid Synthetase From Streptococcus Pneumoniae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - D-ALANYL-LIPOTEICHOIC ACID SYNTHETASE
    Atcc: BAA-255
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Taxid: 562
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 32-427
    Gene: DLTD, SPR1979
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 171101
    Strain: R6

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1GOL10Ligand/IonGLYCEROL
2SO414Ligand/IonSULFATE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:35 , HIS A:36 , ARG A:62BINDING SITE FOR RESIDUE SO4 A 1
02AC2SOFTWARESER A:77 , SER A:78 , GLY A:107 , GLY A:108 , GLN A:137 , TRP A:138 , ILE A:378 , HIS A:379 , GOL A:440BINDING SITE FOR RESIDUE SO4 A 3
03AC3SOFTWAREHIS A:36 , HIS A:37 , THR D:296 , ARG D:338 , HOH D:529BINDING SITE FOR RESIDUE SO4 A 15
04AC4SOFTWAREARG A:217 , GOL A:439 , VAL B:185 , ALA B:186 , MET B:187 , LYS B:188 , HOH B:436BINDING SITE FOR RESIDUE SO4 B 2
05AC5SOFTWARESER B:65 , PRO B:123 , GLN B:124 , HOH B:603BINDING SITE FOR RESIDUE SO4 B 4
06AC6SOFTWARESER B:77 , SER B:78 , GLY B:108 , GLN B:137 , TRP B:138 , HOH B:569 , HOH B:589BINDING SITE FOR RESIDUE SO4 B 5
07AC7SOFTWARESER B:140 , LYS B:141 , ASN B:142BINDING SITE FOR RESIDUE SO4 B 6
08AC8SOFTWAREVAL B:227 , GLY B:229 , TYR B:230 , VAL B:231BINDING SITE FOR RESIDUE SO4 B 10
09AC9SOFTWARESER D:77 , SER D:78 , GLY D:107 , GLY D:108 , GLN D:137 , TRP D:138 , HOH D:570BINDING SITE FOR RESIDUE SO4 D 7
10BC1SOFTWAREPHE D:182 , PRO D:183 , ASN D:184 , VAL D:185 , PHE F:221 , GLN F:224BINDING SITE FOR RESIDUE SO4 D 8
11BC2SOFTWAREALA D:186 , MET D:187 , LYS D:188 , HOH D:512 , ARG F:217BINDING SITE FOR RESIDUE SO4 D 9
12BC3SOFTWAREGLY D:229 , TYR D:230 , VAL D:231 , ASN D:232BINDING SITE FOR RESIDUE SO4 D 11
13BC4SOFTWARESER E:77 , SER E:78 , GLY E:108 , GLN E:137 , HIS E:379 , HOH E:529BINDING SITE FOR RESIDUE SO4 E 13
14BC5SOFTWARESER F:77 , SER F:78 , GLU F:79 , GLN F:137 , TRP F:138 , HIS F:379 , HOH F:460BINDING SITE FOR RESIDUE SO4 F 14
15BC6SOFTWARETHR A:50 , ILE A:51 , ASP A:52 , GLN A:106 , ARG B:228BINDING SITE FOR RESIDUE GOL A 436
16BC7SOFTWAREARG A:228 , THR B:50 , ILE B:51 , ASP B:52BINDING SITE FOR RESIDUE GOL A 437
17BC8SOFTWAREASN A:154 , GLY A:155 , ASP A:156 , HOH A:528 , HOH A:589 , GLN B:218 , PHE B:222BINDING SITE FOR RESIDUE GOL A 438
18BC9SOFTWARELEU A:210 , ARG A:213 , PHE A:214 , SO4 B:2 , MET B:187 , THR E:202BINDING SITE FOR RESIDUE GOL A 439
19CC1SOFTWARESO4 A:3 , SER A:78 , LEU A:81 , ARG A:82 , HOH A:583BINDING SITE FOR RESIDUE GOL A 440
20CC2SOFTWARELYS A:390 , GLU C:254 , GLU C:370 , LEU C:383 , LYS C:390BINDING SITE FOR RESIDUE GOL C 1
21CC3SOFTWARESER C:77 , SER C:78 , GLY C:108 , GLN C:137BINDING SITE FOR RESIDUE GOL C 436
22CC4SOFTWARESER C:140 , LYS C:141 , PHE C:295 , THR C:296 , HOH C:465BINDING SITE FOR RESIDUE GOL C 437
23CC5SOFTWARETHR C:176 , LEU C:179 , GLN C:180BINDING SITE FOR RESIDUE GOL C 438
24CC6SOFTWARETHR E:50 , ASP E:52 , GLN E:59 , ARG E:228BINDING SITE FOR RESIDUE GOL E 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BMA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BMA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BMA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BMA)

(-) Exons   (0, 0)

(no "Exon" information available for 3BMA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:392
 aligned with Q8DN13_STRR6 | Q8DN13 from UniProtKB/TrEMBL  Length:427

    Alignment length:392
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424  
         Q8DN13_STRR6    35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNECQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKEF 426
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..hhhhhhhhhhhhhhhh.....eeeee...........hhhhhhhhh....eeeee.....hhhhhhhhhh.hhhhhh..eeeee.hhhhh.....hhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh...........hhhhhhhhhhhhhhhh........hhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhh..hhhhhhhhhhhhhhhhhh.....eee...................hhhhhhhhhhhhhhhh.........hhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bma A  35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNERQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKEF 426
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424  


Chain B from PDB  Type:PROTEIN  Length:393
 aligned with Q8DN13_STRR6 | Q8DN13 from UniProtKB/TrEMBL  Length:427

    Alignment length:393
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424   
         Q8DN13_STRR6    35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNECQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKEFQ 427
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee...........hhhhhhhhh....eeeee.....hhhhhhhhhh.hhhhhh..eeeee.hhhhh.....hhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh...........hhhhhhhhhhhhhhhhh.......hhhhhhhhh...hhhhh...........hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhh..hhhhhhhhhhhhhhhhhh.....eee..................hhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bma B  35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNERQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKEFQ 427
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424   


Chain C from PDB  Type:PROTEIN  Length:394
 aligned with Q8DN13_STRR6 | Q8DN13 from UniProtKB/TrEMBL  Length:427

    Alignment length:394
                                                                                                                                                                                                                                                                                                                                                                                                                                  427 
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424  | 
         Q8DN13_STRR6    35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNECQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKEFQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..hhhhhhhhhhhhhhhh.....eeeee...........hhhhhhhhh....eeeee.....hhhhhhhhhh.hhhhhh..eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...........hhhhhhhhhhhhhhhh........hhhhhhhhh...................hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhh.hhhhhhhhhhhhhhhhhh.....eee..................hhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bma C  35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNERQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKEFQE 428
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424    


Chain D from PDB  Type:PROTEIN  Length:389
 aligned with Q8DN13_STRR6 | Q8DN13 from UniProtKB/TrEMBL  Length:427

    Alignment length:392
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424  
         Q8DN13_STRR6    35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNECQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKEF 426
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..hhhhhhhhhhhhhhhh.....eeeee.hhhhh.....hhhhhhhhh....eeeee.....hhhhhhhhhh.hhhhhh..eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.....---hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhh..hhhhhhhhhhhhhhhhhh.....eee..................hhhhhhhhhhhhhhhhh.........hhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bma D  35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNERQASFFGQF---GYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKEF 426
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224|   |  234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424  
                                                                                                                                                                                                                        225 229                                                                                                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:390
 aligned with Q8DN13_STRR6 | Q8DN13 from UniProtKB/TrEMBL  Length:427

    Alignment length:391
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424 
         Q8DN13_STRR6    35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNECQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKE 425
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee...........hhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhh...eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...-hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhh.........hhhhh......hhhhhhhhhhhhhhhh..eeeeee.....hhhhhh..hhhhhhhhhhhhhhhhhh.....eee..................hhhhhhhhhhhhhhhhh.........hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bma E  35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNERQASFFGQFS-RGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKE 425
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224 | |   234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424 
                                                                                                                                                                                                                         226 |                                                                                                                                                                                                     
                                                                                                                                                                                                                           228                                                                                                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:387
 aligned with Q8DN13_STRR6 | Q8DN13 from UniProtKB/TrEMBL  Length:427

    Alignment length:389
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         
         Q8DN13_STRR6    35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNECQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDV 423
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..hhhhhhhhhhhhhhh......eeeee...........hhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhh...eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...--hhhhhhhhh.hhhhhh....hhhhhhhhhhhhhhhh........hhhhhh......................hhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhh..hhhhhhhhhhhhhhhhhh.....eee..hhhhh............hhhhhhhhhhhhhhhh.........hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bma F  35 MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNERQASFFGQFS--GYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDV 423
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224 |  |  234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         
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(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q8DN13_STRR6 | Q8DN13)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

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