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(-) Description

Title :  CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF PUTATIVE TRANSCRIPTIONAL REGULATOR FROM VIBRIO CHOLERAE, TARGETED DOMAIN 79-240
 
Authors :  C. Chang, L. Volkart, S. Clancy, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  04 Dec 07  (Deposition) - 11 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Putative Transcriptional Regulator Iclr, Vibrio Cholerae, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, L. Volkart, S. Clancy, A. Joachimiak
Crystal Structure Of C-Terminal Domain Of Putative Transcriptional Regulator From Vibrio Cholerae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, PUTATIVE
    Atcc: 39315
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3) DERIVATIVE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VC_A0029
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961
    Organism Taxid: 243277
    Strain: EL TOR INABA N16961 / SEROTYPE O1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:188 , GLU A:191 , HOH A:280BINDING SITE FOR RESIDUE CL A 251
2AC2SOFTWAREHIS A:220 , ARG A:221 , HOH A:261 , HOH A:264BINDING SITE FOR RESIDUE CL A 252

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BJN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BJN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BJN)

(-) Exons   (0, 0)

(no "Exon" information available for 3BJN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with Q9KND6_VIBCH | Q9KND6 from UniProtKB/TrEMBL  Length:244

    Alignment length:162
                                    88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238  
         Q9KND6_VIBCH    79 SYETSQHNLDAVEAVLSRLQKQTGEMAAYMVPVGYRALCVSQRESMQALRCSFVQGQSQPLLRGASSKVMLAYMPAARCEKILRYFGEDPTLDKWQSEFEKIRRHGYAVSTSEIDPGVSGISAPVMKGSKLIGAISVMAPAHRVESNKQRIILHVLQAARAL 240
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3bjnA00 A:79-240  [code=3.30.450.40, no name defined]                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeee...............eee..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.eeee......eeeeeeeeee..eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bjn A  79 SYETSQHNLDAVEAVLSRLQKQTGEmAAYmVPVGYRALCVSQRESmQALRCSFVQGQSQPLLRGASSKVmLAYmPAARCEKILRYFGEDPTLDKWQSEFEKIRRHGYAVSTSEIDPGVSGISAPVmKGSKLIGAISVmAPAHRVESNKQRIILHVLQAARAL 240
                                    88        98     | 108       118     | 128       138       148   |   158       168       178       188       198     | 208       218       228       238  
                                                   104-MSE             124-MSE                 148-MSE                                                 204-MSE     216-MSE                    
                                                       108-MSE                                     152-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BJN)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BJN)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9KND6_VIBCH | Q9KND6)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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