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Title :   CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE FROM LEGIONELLA PNEUMOPHILA

Authors :   C. Chang, H. Li, L. Freeman, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)

Date :   28 Nov 07 (Deposition) - 04 Dec 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Adenylosuccinate Lyase, Legionella Pneumophila, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Chang, H. Li, L. Freeman, A. Joachimiak
Crystal Structure Of Adenylosuccinate Lyase From Legionella Pneumophila.
To Be Published
PubMed: search

Molecule 1 - ADENYLOSUCCINATE LYASE
	Atcc	:	33152
	Chains	:	A
	EC Number	:	4.3.2.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3) DERIVATIVE
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	LPG0801
	Organism Scientific	:	LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1
	Organism Taxid	:	272624
	Strain	:	PHILADELPHIA 1, DSM 7513

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 14)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	MSE	11	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 56)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL
2	MSE	44	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	8	Ligand/Ion	SULFATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:36 , HIS A:91 , ASP A:92 , VAL A:93 , SER A:123 , ASN A:127	BINDING SITE FOR RESIDUE SO4 A 501
2	AC2	SOFTWARE	HIS A:91 , HIS A:171 , HOH A:569 , HOH A:610	BINDING SITE FOR RESIDUE SO4 A 502
3	AC3	SOFTWARE	ASN A:128 , ILE A:203 , PRO A:204 , GLU A:249 , HIS A:251 , ILE A:254 , HOH A:522 , HOH A:547 , HOH A:644	BINDING SITE FOR RESIDUE GOL A 503

(no "SS Bond" information available for 3BHG)

(no "Cis Peptide Bond" information available for 3BHG)

(no "SAP(SNP)/Variant" information available for 3BHG)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FUMARATE_LYASES	PS00163	Fumarate lyases signature.	PUR8_LEGPH	294-303	1	A:295-303

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FUMARATE_LYASES	PS00163	Fumarate lyases signature.	PUR8_LEGPH	294-303	4	A:295-303

(no "Exon" information available for 3BHG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:448
 aligned with PUR8_LEGPH | Q5ZXD1 from UniProtKB/Swiss-Prot  Length:456

    Alignment length:454
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452    
           PUR8_LEGPH     3 LTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVMRRYNEPNAYEQLKELTRGQMIDAENLKKFIKTLSIPEEAKAELMKLTPETYTGLATQLVKAFS 456
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bhgA01 A:3-117 Fumarase/aspartase (N-terminal domain)                                                             3bhgA02 A:118-381,A:446-456 Fumarase/aspartase (Central domain)                                                                                                                                                                                                         3bhgA03 A:382-445 Fumarase/aspartase (C-terminal domain)        3bhgA02     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.......hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhh..ee........hhhhhhhh...hhhhhhhhhhhhh..ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..------.........hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FUMARATE_L--------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bhg A   3 LTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLmVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALmIKQAIAQVIQPTIAEImGSITLLGKQHADVAmLSRTHGQPATPTTmGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTTQIEPHDGIAEVSQImVRINNILLDYTQDIWSYISLGYFKQKT------SSTmPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRmQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVmRRYNEPNAYEQLKELTRGQmIDAENLKKFIKTLSIPEEAKAELmKLTPETYTGLATQLVKAFS 456
                                    12        22        32     |  42        52        62        72        82        92       102       112       122       132 |     142       152       162   |   172       182       192       202       212       222       232       242       252       262       272       282     |   -  |  | 302       312       322       332|      342       352       362       372       382       392|      402       412|      422       432    |  442       452    
                                                              38-MSE                                                                                         134-MSE          151-MSE        166-MSE       180-MSE                                                                          261-MSE                    288    295  |                                333-MSE                                                     393-MSE             413-MSE                 437-MSE               
                                                                                                                                                                                                                                                                                                                                 298-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3BHG)

(no "Pfam Domain" information available for 3BHG)

Asymmetric Unit(hide GO term definitions)

Chain A (PUR8_LEGPH | Q5ZXD1)

molecular function
	GO:0070626	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity	Catalysis of the reaction: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate = fumarate + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide.
	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	Catalysis of the reaction: N6-(1,2-dicarboxyethyl)AMP = fumarate + AMP.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0044208	'de novo' AMP biosynthetic process	The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from inosine 5'-monophosphate (IMP).
	GO:0006189	'de novo' IMP biosynthetic process	The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
	GO:0006188	IMP biosynthetic process	The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate.
	GO:0006164	purine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
	GO:0009152	purine ribonucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

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