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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT OF AAA+ATPASE FROM HAEMOPHILUS INFLUENZAE
 
Authors :  U. A. Ramagopal, Y. Patskovsky, J. B. Bonanno, A. J. Meyer, R. Toro, J. Fr J. Adams, J. Koss, M. Maletic, T. Gheyi, J. M. Sauder, S. K. Burley, S. C. York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  26 Nov 07  (Deposition) - 01 Jan 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (4x)
Keywords :  Structural Genomics, Predicted Aaa+Atpase C-Terminal Fragment, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Atp-Binding, Helicase, Nucleotide- Binding, Nucleotide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, Y. Patskovsky, J. B. Bonanno, A. J. Meyer, R. Toro, J. Freeman, J. Adams, J. Koss, M. Maletic, T. Gheyi, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of The C-Terminal Fragment Of Aaa+Atpase From Haemophilus Influenzae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PREDICTED ATPASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BC-PSGX4(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NTHI1458
    Mutation: YES
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 281310
    Strain: 86-028NP

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (4x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1SO412Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:403 , TYR A:404 , PHE A:405 , ASP A:411 , HOH A:458 , HOH A:499 , HOH A:512 , HOH A:524BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWARETYR A:289 , ARG A:292 , ARG A:293 , TYR B:289 , ARG B:292 , ARG B:293 , LEU B:378 , HOH B:540BINDING SITE FOR RESIDUE SO4 B 2
3AC3SOFTWAREPRO B:343 , LYS B:429 , ARG B:432 , HOH B:476 , HOH B:508BINDING SITE FOR RESIDUE SO4 B 3

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BGE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BGE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BGE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BGE)

(-) Exons   (0, 0)

(no "Exon" information available for 3BGE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:163
 aligned with Q4QL22_HAEI8 | Q4QL22 from UniProtKB/TrEMBL  Length:446

    Alignment length:184
                                   260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430    
         Q4QL22_HAEI8   251 GDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFPPELKDTQYYFPTNRGMEIQIKEKLERLR 434
               SCOP domains d3bgea1 A:251-434 Uncharacterized protein NTHI1458                                                                                                                                       SCOP domains
               CATH domains 3bgeA01 A:251-346  [code=1.20.272.10, no name defined]                                          3bgeA02                   --3bge                     A02 A:347-372,A:375-434             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhh......---------------------......hhhhh...........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bge A 251 GDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNL---------------------AGENYFPPELKDTQYYFPTNRGMEIQIKEKLERLR 434
                                   260       270       280       290       300       310       320       330       340       350       360       370       | -         -       400       410       420       430    
                                                                                                                                                         378                   400                                  


Chain B from PDB  Type:PROTEIN  Length:163
 aligned with Q4QL22_HAEI8 | Q4QL22 from UniProtKB/TrEMBL  Length:446

    Alignment length:184
                                   260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430    
         Q4QL22_HAEI8   251 GDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFPPELKDTQYYFPTNRGMEIQIKEKLERLR 434
               SCOP domains d3bgeb_ B: Uncharacterized protein NTHI1458                                                                                                                                              SCOP domains
               CATH domains 3bgeB01 B:251-346  [code=1.20.272.10, no name defined]                                          3bgeB02                   --3bgeB02                      B:347-372,B:375-434             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhh.........---------------------...hhhhh...........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bge B 251 GDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKE---------------------NYFPPELKDTQYYFPTNRGMEIQIKEKLERLR 434
                                   260       270       280       290       300       310       320       330       340       350       360       370       380|        -         -  |    410       420       430    
                                                                                                                                                            381                   403
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BGE)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q4QL22_HAEI8 | Q4QL22)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

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