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(-) Description

Title :  CRYSTAL STRUCTURE OF ZN-DEPENDENT ARGININE CARBOXYPEPTIDASE
 
Authors :  Y. Patskovsky, U. A. Ramagopal, R. Toro, A. J. Meyer, J. Freeman, M. Iizu K. Bain, L. Rodgers, F. Raushel, J. M. Sauder, S. K. Burley, S. C. Almo, N Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  16 Nov 07  (Deposition) - 27 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Unknown Source, Amidohydrolase, Sargasso Sea, Structural Genomics, Protein Structure Initiative, Psi, New York Sgx Research Center For Structural Genomics, Nysgxrc, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. F. Xiang, Y. Patskovsky, C. Xu, A. J. Meyer, J. M. Sauder, S. K. Burley S. C. Almo, F. M. Raushel
Functional Identification Of Incorrectly Annotated Prolidases From The Amidohydrolase Superfamily Of Enzymes.
Biochemistry V. 48 3730 2009
PubMed-ID: 19281183  |  Reference-DOI: 10.1021/BI900111Q

(-) Compounds

Molecule 1 - ZN-DEPENDENT ARGININE CARBOXYPEPTIDASE
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: IBEA_CTG=2118574
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644
    Other Details: ENVIRONMENTAL SAMPLE FROM SARGASSO SEA

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 26)

Asymmetric/Biological Unit (3, 26)
No.NameCountTypeFull Name
1ARG8Mod. Amino AcidARGININE
2GOL16Ligand/IonGLYCEROL
3MG2Ligand/IonMAGNESIUM ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR F:128 , GLU F:392 , HOH F:556 , HOH F:557 , HOH F:579BINDING SITE FOR RESIDUE MG F 503
02AC2SOFTWARETHR H:128 , GLU H:392 , HOH H:512 , HOH H:556 , HOH H:577 , HOH H:578BINDING SITE FOR RESIDUE MG H 502
03AC3SOFTWAREHIS E:142 , GLY E:188 , VAL E:189 , MET E:190 , HIS E:223 , HIS E:225 , HIS E:243 , ASP E:265 , GLU E:289 , VAL E:292 , GLY E:293 , GLN E:296 , ASP E:315 , HOH E:542BINDING SITE FOR RESIDUE ARG A 501
04AC4SOFTWAREHIS B:142 , GLY B:188 , VAL B:189 , MET B:190 , HIS B:223 , HIS B:225 , HIS B:243 , ASP B:265 , GLU B:289 , VAL B:292 , GLN B:296 , ASP B:315 , HOH B:508BINDING SITE FOR RESIDUE ARG B 501
05AC5SOFTWAREHOH C:519 , HOH C:536 , HIS D:142 , GLY D:188 , VAL D:189 , MET D:190 , HIS D:223 , HIS D:225 , HIS D:243 , ASP D:265 , VAL D:268 , GLU D:289 , VAL D:292 , GLN D:296 , ASP D:315 , HOH D:540BINDING SITE FOR RESIDUE ARG C 501
06AC6SOFTWAREHIS C:142 , GLY C:188 , VAL C:189 , MET C:190 , HIS C:223 , HIS C:225 , HIS C:243 , ASP C:265 , GLU C:289 , VAL C:292 , GLN C:296 , ASP C:315 , ILE C:318 , HOH C:518BINDING SITE FOR RESIDUE ARG D 501
07AC7SOFTWAREHIS F:142 , GLY F:188 , VAL F:189 , MET F:190 , HIS F:223 , HIS F:225 , HIS F:243 , ASP F:265 , VAL F:268 , GLU F:289 , VAL F:292 , GLN F:296 , ASP F:315 , HOH F:551BINDING SITE FOR RESIDUE ARG E 501
08AC8SOFTWAREHIS G:142 , GLY G:188 , VAL G:189 , MET G:190 , HIS G:223 , HIS G:225 , HIS G:243 , ASP G:265 , GLU G:289 , VAL G:292 , GLN G:296 , ASP G:315 , HOH G:511BINDING SITE FOR RESIDUE ARG F 501
09AC9SOFTWAREHIS H:142 , GLY H:188 , VAL H:189 , MET H:190 , HIS H:223 , HIS H:225 , HIS H:243 , ASP H:265 , VAL H:268 , GLU H:289 , VAL H:292 , GLN H:296 , ASP H:315 , HOH H:513BINDING SITE FOR RESIDUE ARG G 501
10BC1SOFTWAREHIS A:142 , GLY A:188 , VAL A:189 , MET A:190 , HIS A:223 , HIS A:225 , HIS A:243 , ASP A:265 , VAL A:268 , GLU A:289 , VAL A:292 , GLN A:296 , ASP A:315 , HOH A:558BINDING SITE FOR RESIDUE ARG H 501
11BC2SOFTWAREHIS A:64 , GLY A:67 , ASN A:68 , ASP A:69 , ASN A:90 , GLY A:317 , HIS A:321BINDING SITE FOR RESIDUE GOL A 502
12BC3SOFTWARESER A:80 , HIS A:81 , ASN A:109 , HOH A:522 , SER B:80 , HIS B:81 , ASN B:109BINDING SITE FOR RESIDUE GOL A 503
13BC4SOFTWAREASP B:69 , TRP B:86 , ASN B:90 , LYS B:93 , ASP B:320 , HIS B:321 , HOH B:558BINDING SITE FOR RESIDUE GOL B 502
14BC5SOFTWAREGLU B:151 , SER C:80 , HIS C:81 , ASN C:109 , SER H:80 , HIS H:81 , ASN H:109BINDING SITE FOR RESIDUE GOL C 502
15BC6SOFTWAREHIS D:64 , ASP D:69 , ASN D:90 , GLY D:317 , HIS D:321 , HOH D:546BINDING SITE FOR RESIDUE GOL D 502
16BC7SOFTWAREASP D:117 , GLU D:120 , ARG D:121 , GLU G:74BINDING SITE FOR RESIDUE GOL D 503
17BC8SOFTWAREHIS E:64 , GLY E:67 , ASN E:68 , ASP E:69 , ASN E:90 , GLY E:317 , HIS E:321 , HOH E:530BINDING SITE FOR RESIDUE GOL E 502
18BC9SOFTWARESER E:80 , HIS E:81 , ASN E:109 , SER F:80 , HIS F:81 , ASN F:109BINDING SITE FOR RESIDUE GOL E 503
19CC1SOFTWAREGLU F:120 , GLY F:122 , LYS F:391 , GLU F:392BINDING SITE FOR RESIDUE GOL F 504
20CC2SOFTWAREASP F:69 , TRP F:86 , ASN F:90 , LYS F:93 , ASP F:320 , HIS F:321BINDING SITE FOR RESIDUE GOL F 505
21CC3SOFTWAREHIS F:214 , GLY F:217 , ASP F:239BINDING SITE FOR RESIDUE GOL F 506
22CC4SOFTWAREHIS G:64 , GLY G:67 , ASN G:68 , ASP G:69 , ASN G:90 , GLY G:317 , HIS G:321BINDING SITE FOR RESIDUE GOL G 502
23CC5SOFTWAREHIS H:214 , GLY H:237 , ASP H:239 , ASN H:258BINDING SITE FOR RESIDUE GOL H 503
24CC6SOFTWAREALA H:135 , CYS H:143 , SER H:156 , GLU H:157 , GLY H:158BINDING SITE FOR RESIDUE GOL H 504
25CC7SOFTWAREASP H:69 , TRP H:86 , ASN H:90 , LYS H:93 , PHE H:319 , ASP H:320 , HIS H:321BINDING SITE FOR RESIDUE GOL H 505
26CC8SOFTWAREHIS H:64 , ILE H:65 , GLY H:67 , ASP H:69 , ASN H:90 , HIS H:321BINDING SITE FOR RESIDUE GOL H 506

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:143 -A:184
2B:143 -B:184
3C:143 -C:184
4D:143 -D:184
5E:143 -E:184
6F:143 -F:184
7G:143 -G:184
8H:143 -H:184

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BE7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BE7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BE7)

(-) Exons   (0, 0)

(no "Exon" information available for 3BE7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:399
                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d3be7a1 A:3-56,A:360-400                              d3be7a2 A:57-359 Zn-dependent arginine carboxypeptidase                                                                                                                                                                                                                                                        d3be7a1 A:3-56,A:360-400                 - SCOP domains
               CATH domains 3be7A01 A:3-58,A:359-400 Urease, subunit C, domain 1    3be7A02 A:59-358 Metal-dependent hydrolases                                                                                                                                                                                                                                                                 3be7A01 A:3-58,A:359-400                  - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee......ee..eeeee..eeeeee.......eeeeeeeeeeee.eeeeee........hhhhh...hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh......eeee..............................hhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhhh..eee....hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh..ee...........hhhhhhhhhhhh..hhhhhhhh.hhhhhhhhh..............eeee......hhhhh....eeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3be7 A   3 SEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIRTLEEVAFVMKEGKVYKREGR 501
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       ||
                                                                                                                                                                                                                                                                                                                                                                                                                                       400|
                                                                                                                                                                                                                                                                                                                                                                                                                                        501


Chain B from PDB  Type:PROTEIN  Length:396
                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d3be7b1 B:4-56,B:360-398                             d3be7b2 B:57-359 Zn-dependent arginine carboxypeptidase                                                                                                                                                                                                                                                        d3be7b1 B:4-56,B:360-398               - SCOP domains
               CATH domains 3be7B01 B:4-58,B:359-398 Urease, subunit C, domain 1   3be7B02 B:59-358 Metal-dependent hydrolases                                                                                                                                                                                                                                                                 3be7B01 B:4-58,B:359-398                - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eee......ee..eeeee..eeeeee........eee....eeee.eeeeee........hhhhh....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh......eee...............................hhhhhhhhhhhhhhhh..eeeee.................hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhhhh.eee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..ee..........hhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhh..............eeee......hhhhh....eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3be7 B   4 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIRTLEEVAFVMKEGKVYKRR 501
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393    ||
                                                                                                                                                                                                                                                                                                                                                                                                                                    398|
                                                                                                                                                                                                                                                                                                                                                                                                                                     501


Chain C from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d3be7c1 C:5-56,C:360-398                            d3be7c2 C:57-359 Zn-dependent arginine carboxypeptidase                                                                                                                                                                                                                                                        d3be7c1 C:5-56,C:360-398               - SCOP domains
               CATH domains 3be7C01 C:5-58,C:359-398 Urease, subunit C, domain 1  3be7C02 C:59-358 Metal-dependent hydrolases                                                                                                                                                                                                                                                                 3be7C01 C:5-58,C:359-398                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee......ee..eeeee..eeeeee.......eeeeeeeeeeee.eeeeee................hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh......eeee.................hhhhh........hhhhhhhhhhhhhhh....eeee.................hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhhhh.eeee...hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh..eee..........hhhhhhhhhhhh..hhhhhhhh.hhhhhhhhh..............eeee......hhhhhhhh.eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3be7 C   5 DFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIRTLEEVAFVMKEGKVYKRR 501
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394   ||
                                                                                                                                                                                                                                                                                                                                                                                                                                   398|
                                                                                                                                                                                                                                                                                                                                                                                                                                    501


Chain D from PDB  Type:PROTEIN  Length:396
                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d3be7d1 D:4-56,D:360-398                             d3be7d2 D:57-359 Zn-dependent arginine carboxypeptidase                                                                                                                                                                                                                                                        d3be7d1 D:4-56,D:360-398               - SCOP domains
               CATH domains 3be7D01 D:4-58,D:359-398 Urease, subunit C, domain 1   3be7D02 D:59-358 Metal-dependent hydrolases                                                                                                                                                                                                                                                                 3be7D01 D:4-58,D:359-398                - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeee......ee..eeeee..eeeeee.......eeeeeeeeeeee.eeeeee........hhhhh....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh......eeee..............................hhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhhh..eee....hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh..ee...........hhhhhhhhhhhh..hhhhhhhh.hhhhhhhhh..............eeee......hhhhh....eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3be7 D   4 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIRTLEEVAFVMKEGKVYKRR 501
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393    ||
                                                                                                                                                                                                                                                                                                                                                                                                                                    398|
                                                                                                                                                                                                                                                                                                                                                                                                                                     501


Chain E from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d3be7e1 E:5-56,E:360-398                            d3be7e2 E:57-359 Zn-dependent arginine carboxypeptidase                                                                                                                                                                                                                                                        d3be7e1 E:5-56,E:360-398               - SCOP domains
               CATH domains 3be7E01 E:5-58,E:359-398 Urease, subunit C, domain 1  3be7E02 E:59-358 Metal-dependent hydrolases                                                                                                                                                                                                                                                                 3be7E01 E:5-58,E:359-398                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eee......ee..eeeee..eeeeee........eee....eeee.eeeeee.................hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh......eeee.................hhhhh........hhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhhhh.eeee...hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh..eee..........hhhhhhhhhhhh..hhhhhhhh.hhhhhhhhh..............eeee......hhhhhhh..eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3be7 E   5 DFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIRTLEEVAFVMKEGKVYKRR 501
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394   ||
                                                                                                                                                                                                                                                                                                                                                                                                                                   398|
                                                                                                                                                                                                                                                                                                                                                                                                                                    501


Chain F from PDB  Type:PROTEIN  Length:396
                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d3be7f1 F:4-56,F:360-398                             d3be7f2 F:57-359 Zn-dependent arginine carboxypeptidase                                                                                                                                                                                                                                                        d3be7f1 F:4-56,F:360-398               - SCOP domains
               CATH domains 3be7F01 F:4-58,F:359-398 Urease, subunit C, domain 1   3be7F02 F:59-358 Metal-dependent hydrolases                                                                                                                                                                                                                                                                 3be7F01 F:4-58,F:359-398                - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..eee......ee..eeeee..eeeeee.......eeee....eeee.eeeeee........hhhhh....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh......eeee..............................hhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhhh..eee....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..............eeee......hhhhhhhh.eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3be7 F   4 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIRTLEEVAFVMKEGKVYKRR 501
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393    ||
                                                                                                                                                                                                                                                                                                                                                                                                                                    398|
                                                                                                                                                                                                                                                                                                                                                                                                                                     501


Chain G from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d3be7g1 G:5-56,G:360-398                            d3be7g2 G:57-359 Zn-dependent arginine carboxypeptidase                                                                                                                                                                                                                                                        d3be7g1 G:5-56,G:360-398               - SCOP domains
               CATH domains 3be7G01 G:5-58,G:359-398 Urease, subunit C, domain 1  3be7G02 G:59-358 Metal-dependent hydrolases                                                                                                                                                                                                                                                                 3be7G01 G:5-58,G:359-398                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eee......ee..eeeee..eeeeee.......eeee....eeee.eeeeee................hhhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh......eeee.................hhhhh........hhhhhhhhhhhhhhhh..eeeee.................hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhhh..eeee...hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh..eee..........hhhhhhhhhhhh..hhhhhhhh.hhhhhhhhh..............eeee......hhhhhhhh.eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3be7 G   5 DFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIRTLEEVAFVMKEGKVYKRR 501
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394   ||
                                                                                                                                                                                                                                                                                                                                                                                                                                   398|
                                                                                                                                                                                                                                                                                                                                                                                                                                    501


Chain H from PDB  Type:PROTEIN  Length:396
                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d3be7h1 H:4-56,H:360-398                             d3be7h2 H:57-359 Zn-dependent arginine carboxypeptidase                                                                                                                                                                                                                                                        d3be7h1 H:4-56,H:360-398               - SCOP domains
               CATH domains 3be7H01 H:4-58,H:359-398 Urease, subunit C, domain 1   3be7H02 H:59-358 Metal-dependent hydrolases                                                                                                                                                                                                                                                                 3be7H01 H:4-58,H:359-398                - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeee......ee..eeeee..eeeeee.......eeeeeeeeeeee.eeeeee................hhhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh......eeee.................hhhhh........hhhhhhhhhhhhhhh...eeeee.................hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeee....hhhhhhhhhhhh.eee....hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh..ee...........hhhhhhhhhhhh..hhhhhhhh.hhhhhhhhh..............eeee......hhhhh....eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3be7 H   4 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIRTLEEVAFVMKEGKVYKRR 501
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393    ||
                                                                                                                                                                                                                                                                                                                                                                                                                                    398|
                                                                                                                                                                                                                                                                                                                                                                                                                                     501
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 16)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Roll (1513)
(-)
Topology: Urease, subunit C; domain 1 (95)
(-)
Homologous Superfamily: Urease, subunit C, domain 1 (95)
(-)
Unidentified. Organism_taxid: 32644. (2)
2a3be7A01A:3-58,A:359-400
2b3be7B01B:4-58,B:359-398
2c3be7D01D:4-58,D:359-398
2d3be7F01F:4-58,F:359-398
2e3be7H01H:4-58,H:359-398
2f3be7C01C:5-58,C:359-398
2g3be7E01E:5-58,E:359-398
2h3be7G01G:5-58,G:359-398

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BE7)

(-) Gene Ontology  (0, 0)

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  3be7
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