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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE MULTIPLE ANTIBIOTIC-RESISTANCE REPRESSOR (SSU05_1136) FROM STREPTOCOCCUS SUIS 89/1591 AT 2.20 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Nov 07  (Deposition) - 04 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Putative Multiple Antibiotic-Resistance Repressor, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Dna-Binding, Transcription Regulation, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Multiple Antibiotic-Resistanc Repressor (Marr) (Zp_00875883. 1) From Streptococcus Suis 89/1591 At 2. 20 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - REGULATORY PROTEIN MARR
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ZP_00875883.1, SSUIDRAFT_0346
    Organism Scientific: STREPTOCOCCUS SUIS
    Organism Taxid: 286604
    Strain: 89/1591

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE8Mod. Amino AcidSELENOMETHIONINE
3PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3PO4-1Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:28 , ARG A:32 , LEU A:67 , LEU A:68 , SER A:71 , TYR A:73 , HOH A:145 , HOH A:211BINDING SITE FOR RESIDUE PO4 A 142
2AC2SOFTWARELYS A:110 , MSE A:113 , ASN A:114 , GLN B:2 , GLU B:5BINDING SITE FOR RESIDUE PO4 A 143
3AC3SOFTWARESER C:29 , THR C:31 , ARG C:32 , ARG C:63 , HIS C:64 , LYS D:12BINDING SITE FOR RESIDUE GOL C 142
4AC4SOFTWARELYS A:12 , SER B:29 , LEU B:30 , THR B:31 , ARG B:32 , ARG B:63 , HIS B:64BINDING SITE FOR RESIDUE GOL B 142
5AC5SOFTWARESER A:29 , THR A:31 , ARG A:32 , ARG A:63 , HIS A:64 , HOH A:155 , LYS B:12BINDING SITE FOR RESIDUE GOL A 144
6AC6SOFTWARELYS C:12 , SER D:29 , THR D:31 , ARG D:32 , ARG D:63BINDING SITE FOR RESIDUE GOL D 142

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BDD)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:43 -Pro A:44
2Ala B:43 -Pro B:44
3Ala C:43 -Pro C:44
4Ala D:43 -Pro D:44

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BDD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BDD)

(-) Exons   (0, 0)

(no "Exon" information available for 3BDD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bddA00 A:2-141 'winged helix' repressor DNA binding domain                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bdd A   2 QEmEDLLYRLKVADETISNLFEKQLGISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKTSmNQILTVEESEQFLATLDKLLIGLQNLPI 141
                              |     11        21        31        41        51        61        71        81        91       101       111 |     121       131       141
                              |                                                                                                          113-MSE                        
                              4-MSE                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bddB00 B:2-141 'winged helix' repressor DNA binding domain                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeehhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bdd B   2 QEmEDLLYRLKVADETISNLFEKQLGISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKEVLVWPTEQAREALITNPSAHHQAIKTSmNQILTVEESEQFLATLDKLLIGLQNLPI 141
                              |     11        21        31        41        51        61        71     || 88        98       108    |  118       128       138   
                              4-MSE                                                                   77|                         113-MSE                        
                                                                                                       85                                                        


Chain C from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bddC00 C:2-141 'winged helix' repressor DNA binding domain                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bdd C   2 QEmEDLLYRLKVADETISNLFEKQLGISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKTSmNQILTVEESEQFLATLDKLLIGLQNLPI 141
                              |     11        21        31        41        51        61        71        81        91       101       111 |     121       131       141
                              4-MSE                                                                                                      113-MSE                        


Chain D from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3bddD00 D:2-141 'winged helix' repressor DNA binding domain                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhhhh..eee..eeeehhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bdd D   2 QEmEDLLYRLKVADETISNLFEKQLGISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKVLVWPTEQAREALITNPSAHHQAIKTSmNQILTVEESEQFLATLDKLLIGLQNLPI 141
                              |     11        21        31        41        51        61        71     || 89        99       109   |   119       129       139  
                              4-MSE                                                                   77|                        113-MSE                        
                                                                                                       86
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BDD)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BDD)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3BDD)

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