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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE KETOSTEROID ISOMERASE (SFRI_1973) FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  09 Nov 07  (Deposition) - 20 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Ketosteroid Isomerase (Yp_750657. 1) From Shewanella Frigidimarina Ncimb 400 At 1. 80 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ORPHAN PROTEIN
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidSPEEDET
    Expression System StrainHK100
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneYP_750657.1, SFRI_1973
    Organism ScientificSHEWANELLA FRIGIDIMARINA
    Organism Taxid318167
    StrainNCIMB 400

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB    
Biological Unit 2 (1x)  CD  
Biological Unit 3 (1x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 40)

Asymmetric Unit (2, 40)
No.NameCountTypeFull Name
1EDO10Ligand/Ion1,2-ETHANEDIOL
2MSE30Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 15)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 11)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:62 , SER A:147 , HOH A:164 , HOH A:212 , LYS C:117BINDING SITE FOR RESIDUE EDO A 148
02AC2SOFTWARETHR B:71 , ASN B:75 , ILE D:25 , GLY D:26 , GLN D:96 , ILE D:97BINDING SITE FOR RESIDUE EDO B 148
03AC3SOFTWAREHIS C:39 , GLN C:43 , GLU C:127 , TRP C:146 , EDO C:150 , HOH C:216BINDING SITE FOR RESIDUE EDO C 148
04AC4SOFTWAREHIS F:39 , LEU F:42 , GLN F:43 , GLU F:127 , HOH F:228BINDING SITE FOR RESIDUE EDO F 148
05AC5SOFTWAREGLU B:62 , ASP B:81 , TRP B:146 , LYS E:117BINDING SITE FOR RESIDUE EDO B 149
06AC6SOFTWARETHR C:100 , GLY C:101 , ASP C:102 , HOH C:162 , HOH C:245 , THR D:100BINDING SITE FOR RESIDUE EDO C 149
07AC7SOFTWARESER C:108 , ILE C:109 , SER C:110 , THR C:125 , EDO C:148BINDING SITE FOR RESIDUE EDO C 150
08AC8SOFTWAREHIS B:39 , GLN B:43 , GLU B:127 , TRP B:146 , HOH B:255BINDING SITE FOR RESIDUE EDO B 150
09AC9SOFTWAREALA A:23 , ARG B:68 , ASP C:102 , GLN C:134 , ALA C:135BINDING SITE FOR RESIDUE EDO C 151
10BC1SOFTWAREGLN D:96 , ILE D:97 , THR D:98 , ILE D:105 , THR D:107 , HOH D:180BINDING SITE FOR RESIDUE EDO D 148

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BB9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BB9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BB9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BB9)

(-) Exons   (0, 0)

(no "Exon" information available for 3BB9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:123
 aligned with Q082J6_SHEFN | Q082J6 from UniProtKB/TrEMBL  Length:147

    Alignment length:125
                                    32        42        52        62        72        82        92       102       112       122       132       142     
         Q082J6_SHEFN    23 AFIGVDSAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHWS 147
               SCOP domains ----d3bb9a1 A:27-147 Uncharacterized protein Sfri1973                                                                         SCOP domains
               CATH domains 3bb9A00 A:23-147  [code=3.10.450.50, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...hhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee..eee.hhhhhhhhhhhhhhhhhhheeeeeeeeeeeee..eeeeeeeeeeee...--.eeeeeeeeeeeee.....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bb9 A  23 AFIGVDSAAGNVVKQFHAALQmGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHmLADmAYLKGLTITPKEHQITITGDIAISTSISHAQGEYK--SIDSmTmETLVLIKQADGRWKITHVHWS 147
                                    32        42 |      52        62        72     |  82        92       102       112    |  122 | |   132       142     
                                                44-MSE                            78-MSE                                117  |   | |                     
                                                                                      82-MSE                               120   | |                     
                                                                                                                               124-MSE                   
                                                                                                                                 126-MSE                 

Chain B from PDB  Type:PROTEIN  Length:125
 aligned with Q082J6_SHEFN | Q082J6 from UniProtKB/TrEMBL  Length:147

    Alignment length:125
                                    32        42        52        62        72        82        92       102       112       122       132       142     
         Q082J6_SHEFN    23 AFIGVDSAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHWS 147
               SCOP domains d3bb9b_ B: Uncharacterized protein Sfri1973                                                                                   SCOP domains
               CATH domains 3bb9B00 B:23-147  [code=3.10.450.50, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...hhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee..eee.hhhhhhhhhhhhhhhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeeeeee.....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bb9 B  23 AFIGVDSAAGNVVKQFHAALQmGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHmLADmAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSmTmETLVLIKQADGRWKITHVHWS 147
                                    32        42 |      52        62        72     |  82        92       102       112       122 | |   132       142     
                                                44-MSE                            78-MSE                                       124-MSE                   
                                                                                      82-MSE                                     126-MSE                 

Chain C from PDB  Type:PROTEIN  Length:125
 aligned with Q082J6_SHEFN | Q082J6 from UniProtKB/TrEMBL  Length:147

    Alignment length:125
                                    32        42        52        62        72        82        92       102       112       122       132       142     
         Q082J6_SHEFN    23 AFIGVDSAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHWS 147
               SCOP domains d3bb9c_ C: Uncharacterized protein Sfri1973                                                                                   SCOP domains
               CATH domains 3bb9C00 C:23-147  [code=3.10.450.50, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...hhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee..eee.hhhhhhhhhhhhhhhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeeeeee.....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bb9 C  23 AFIGVDSAAGNVVKQFHAALQmGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHmLADmAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSmTmETLVLIKQADGRWKITHVHWS 147
                                    32        42 |      52        62        72     |  82        92       102       112       122 | |   132       142     
                                                44-MSE                            78-MSE                                       124-MSE                   
                                                                                      82-MSE                                     126-MSE                 

Chain D from PDB  Type:PROTEIN  Length:125
 aligned with Q082J6_SHEFN | Q082J6 from UniProtKB/TrEMBL  Length:147

    Alignment length:125
                                    32        42        52        62        72        82        92       102       112       122       132       142     
         Q082J6_SHEFN    23 AFIGVDSAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHWS 147
               SCOP domains d3bb9d_ D: Uncharacterized protein Sfri1973                                                                                   SCOP domains
               CATH domains 3bb9D00 D:23-147  [code=3.10.450.50, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee..eee.hhhhhhhhhhhhhhhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeeeeee.....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bb9 D  23 AFIGVDSAAGNVVKQFHAALQmGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHmLADmAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSmTmETLVLIKQADGRWKITHVHWS 147
                                    32        42 |      52        62        72     |  82        92       102       112       122 | |   132       142     
                                                44-MSE                            78-MSE                                       124-MSE                   
                                                                                      82-MSE                                     126-MSE                 

Chain E from PDB  Type:PROTEIN  Length:125
 aligned with Q082J6_SHEFN | Q082J6 from UniProtKB/TrEMBL  Length:147

    Alignment length:125
                                    32        42        52        62        72        82        92       102       112       122       132       142     
         Q082J6_SHEFN    23 AFIGVDSAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHWS 147
               SCOP domains d3bb9e_ E: Uncharacterized protein Sfri1973                                                                                   SCOP domains
               CATH domains 3bb9E00 E:23-147  [code=3.10.450.50, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...hhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee..eee.hhhhhhhhhhhhhhhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeeeeee.....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bb9 E  23 AFIGVDSAAGNVVKQFHAALQmGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHmLADmAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSmTmETLVLIKQADGRWKITHVHWS 147
                                    32        42 |      52        62        72     |  82        92       102       112       122 | |   132       142     
                                                44-MSE                            78-MSE                                       124-MSE                   
                                                                                      82-MSE                                     126-MSE                 

Chain F from PDB  Type:PROTEIN  Length:120
 aligned with Q082J6_SHEFN | Q082J6 from UniProtKB/TrEMBL  Length:147

    Alignment length:120
                                    37        47        57        67        77        87        97       107       117       127       137       147
         Q082J6_SHEFN    28 DSAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHWS 147
               SCOP domains d3bb9f_ F: Uncharacterized protein Sfri1973                                                                              SCOP domains
               CATH domains 3bb9F00 F:28-147  [code=3.10.450.50, no name defined]                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee..eee.hhhhhhhhhhhhhhhhhhheeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeeeeee.....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bb9 F  28 DSAAGNVVKQFHAALQmGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHmLADmAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSmTmETLVLIKQADGRWKITHVHWS 147
                                    37      | 47        57        67        77|   |   87        97       107       117      |127       137       147
                                           44-MSE                            78-MSE                                       124-MSE                   
                                                                                 82-MSE                                     126-MSE                 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BB9)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3BB9)

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