3BB6 - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE P64488 PROTEIN FROM E.COLI (STRAIN K12). NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER596

Authors :   A. P. Kuzin, M. Su, J. Seetharaman, D. Wang, H. Janjua, L. Owens, L-C. Ma, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Northeast Structural Genomics Consortium (Nesg)

Date :   09 Nov 07 (Deposition) - 20 Nov 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,C  (1x)
Biol. Unit 3: B,D  (1x)

Keywords :   P64488, Er596, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. P. Kuzin, M. Su, J. Seetharaman, D. Wang, H. Janjua, L. Owens, L-C. Ma R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
X-Ray Structure Of The P64488 From E. Coli (Strain K12).
To Be Published
PubMed: search

Molecule 1 - UNCHARACTERIZED PROTEIN YEAR
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	YEAR, B1797, JW1786
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83333
	Strain	:	K12

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A		C
Biological Unit 3 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 19)

No.	Name	Count	Type	Full Name
1	MSE	15	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 15)

No.	Name	Count	Type	Full Name
1	MSE	15	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 7)

No.	Name	Count	Type	Full Name
1	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:30 , ASP A:32 , HIS A:83	BINDING SITE FOR RESIDUE ZN A 128
2	AC2	SOFTWARE	HIS B:30 , ASP B:32 , HIS B:83	BINDING SITE FOR RESIDUE ZN B 128
3	AC3	SOFTWARE	HIS C:30 , ASP C:32 , HIS C:83	BINDING SITE FOR RESIDUE ZN C 128
4	AC4	SOFTWARE	HIS D:30 , ASP D:32 , HIS D:83	BINDING SITE FOR RESIDUE ZN D 128

(no "SS Bond" information available for 3BB6)

(no "Cis Peptide Bond" information available for 3BB6)

(no "SAP(SNP)/Variant" information available for 3BB6)

(no "PROSITE Motif" information available for 3BB6)

(no "Exon" information available for 3BB6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:109
 aligned with YEAR_ECOLI | P64488 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:109
                                    10        20        30        40        50        60        70        80        90       100         
           YEAR_ECOLI     1 MLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAPEVLMEGA 109
               SCOP domains d3bb6a1 A:1-109 Uncharacterized protein YeaR                                                                  SCOP domains
               CATH domains -3bb6A00 A:2-109 Jelly Rolls                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........hhhhhh..........eeeeeeeee.eeeeeee.........eeeeee...eee.....eeeeee.....eeeeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3bb6 A   1 mLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVmHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAmTDDTYFNIDFFVAPEVLmEGA 109
                            |       10        20        30        40     |  50        60        70        80       |90       100     |   
                            |                                           46-MSE                                    88-MSE           106-MSE
                            1-MSE

Chain B from PDB  Type:PROTEIN  Length:111
 aligned with YEAR_ECOLI | P64488 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:111
                                    10        20        30        40        50        60        70        80        90       100       110 
           YEAR_ECOLI     1 MLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAPEVLMEGAQQ 111
               SCOP domains d3bb6b_ B: Uncharacterized protein YeaR                                                                         SCOP domains
               CATH domains -3bb6B00 B:2-111 Jelly Rolls                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........hhhhhh..........eeeeeeeee.eeeeee..........eeeeee..eeee......eeeee.....eeeeeeeehhhhheee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3bb6 B   1 mLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVmHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAmTDDTYFNIDFFVAPEVLmEGAQQ 111
                            |       10        20        30        40     |  50        60        70        80       |90       100     | 110 
                            |                                           46-MSE                                    88-MSE           106-MSE 
                            1-MSE

Chain C from PDB  Type:PROTEIN  Length:113
 aligned with YEAR_ECOLI | P64488 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:113
                                    10        20        30        40        50        60        70        80        90       100       110   
           YEAR_ECOLI     1 MLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAPEVLMEGAQQRK 113
               SCOP domains d3bb6c_ C: Uncharacterized protein YeaR                                                                           SCOP domains
               CATH domains -3bb6C00 C:2-113 Jelly Rolls                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........hhhhhh.eee.......eeeeeeee.eeeeee..........eeeeee..eeee......eeeee.....eeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 3bb6 C   1 mLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVmHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAmTDDTYFNIDFFVAPEVLmEGAQQRK 113
                            |       10        20        30        40     |  50        60        70        80       |90       100     | 110   
                            1-MSE                                       46-MSE                                    88-MSE           106-MSE

Chain D from PDB  Type:PROTEIN  Length:103
 aligned with YEAR_ECOLI | P64488 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:103
                                    10        20        30        40        50        60        70        80        90       100   
           YEAR_ECOLI     1 MLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAPE 103
               SCOP domains d3bb6d_ D: Uncharacterized protein YeaR                                                                 SCOP domains
               CATH domains -3bb6D00 D:2-103 Jelly Rolls                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........hhhhh..eee.......eeeeeeee.eeeeee..........eeeeee..eeee......eeeee.....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3bb6 D   1 mLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLSVmHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAmTDDTYFNIDFFVAPE 103
                            |       10        20        30        40     |  50        60        70        80       |90       100   
                            1-MSE                                       46-MSE                                    88-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Double-stranded beta-helix (580)

Superfamily: Clavaminate synthase-like (197)

Family: TehB-like (2)

Protein domain: Uncharacterized protein YeaR (1)

Escherichia coli [TaxId: 562] (1)

1a	d3bb6a1	A:1-109
1b	d3bb6b_	B:
1c	d3bb6c_	C:
1d	d3bb6d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Jelly Rolls (1293)

Homologous Superfamily: Jelly Rolls (177)

Escherichia coli k12. Organism_taxid: 83333. Strain: k12. (1)

1a	3bb6C00	C:2-113
1b	3bb6B00	B:2-111
1c	3bb6A00	A:2-109
1d	3bb6D00	D:2-103

(no "Pfam Domain" information available for 3BB6)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3BB6)

Asymmetric Unit
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Description

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Ligands, Modified Residues, Ions (2, 19)

Sites (4, 4)

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