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(-) Description

Title :  CRYSTAL STRUCTURE OF GDP-4-KETO-6-DEOXYMANNOSE-3-DEHYDRATASE (COLD) H188N MUTANT WITH BOUND GDP-PEROSAMINE
 
Authors :  P. D. Cook, H. M. Holden
Date :  02 Nov 07  (Deposition) - 27 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Aspartate Aminotransferase, Colitose, Perosamine, O-Antigen, Plp, Pyridoxal Phosphate, , Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. D. Cook, H. M. Holden
Gdp-4-Keto-6-Deoxy-D-Mannose 3-Dehydratase, Accommodating A Sugar Substrate In The Active Site.
J. Biol. Chem. V. 283 4295 2008
PubMed-ID: 18045869  |  Reference-DOI: 10.1074/JBC.M708893200

(-) Compounds

Molecule 1 - PYRIDOXAMINE 5-PHOSPHATE-DEPENDENT DEHYDRASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28JT
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: WBDK
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 244320
    Synonym: WBDK

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric/Biological Unit (3, 13)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2G4M2Ligand/Ion[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3S,4S,5S,6R)-3,4-DIHYDROXY-5-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL DIHYDROGEN DIPHOSPHATE
3NA8Ligand/IonSODIUM ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:175 , ASP A:201 , HOH A:688 , HOH A:751 , HOH B:717 , HOH B:747BINDING SITE FOR RESIDUE NA A 669
02AC2SOFTWARELEU A:6 , ASN A:371 , HOH A:743 , HOH A:744 , HOH A:872BINDING SITE FOR RESIDUE NA A 671
03AC3SOFTWAREGLU A:80 , LYS A:103 , ALA A:122 , THR A:124 , SER A:126 , THR A:127BINDING SITE FOR RESIDUE NA A 672
04AC4SOFTWARETHR A:10 , ASN A:188 , ARG A:273 , GLN A:373 , HOH A:831 , HOH A:853BINDING SITE FOR RESIDUE NA A 673
05AC5SOFTWARELEU B:6 , ASN B:371 , HOH B:694 , HOH B:722 , HOH B:745 , HOH B:751BINDING SITE FOR RESIDUE NA B 666
06AC6SOFTWAREGLU B:375 , ASP B:378 , HOH B:847 , HOH B:912 , HOH B:995 , HOH B:997 , HOH B:1000BINDING SITE FOR RESIDUE NA B 667
07AC7SOFTWAREPHE A:242 , ASN B:341 , ASP B:343 , HOH B:895 , HOH B:959BINDING SITE FOR RESIDUE NA B 668
08AC8SOFTWARETHR B:175 , ASP B:201 , HOH B:765 , HOH B:798 , HOH B:859 , HOH B:892BINDING SITE FOR RESIDUE NA B 670
09AC9SOFTWARESER A:55 , GLY A:56 , SER A:57 , ASN A:60 , SER A:87 , TRP A:88 , THR A:91 , ASP A:159 , CYS A:161 , GLU A:162 , SER A:183 , PHE A:185 , TYR A:186 , SER A:187 , GLU A:329 , ARG A:331 , HOH A:677 , HOH A:756 , HOH A:817 , HOH A:885 , HOH A:914 , LYS B:26 , MET B:27 , PHE B:28 , THR B:29 , HIS B:215 , ARG B:219 , PHE B:240 , ASN B:248 , HOH B:903BINDING SITE FOR RESIDUE G4M A 500
10BC1SOFTWAREGLU A:38 , ALA A:50 , TYR A:206 , HOH A:811BINDING SITE FOR RESIDUE EDO A 674
11BC2SOFTWARESER A:9 , THR A:10 , TRP A:11 , ARG A:268 , GLN A:373BINDING SITE FOR RESIDUE EDO A 675
12BC3SOFTWAREGLY A:78 , GLU A:80 , ARG A:101BINDING SITE FOR RESIDUE EDO A 676
13BC4SOFTWARELYS A:26 , MET A:27 , PHE A:28 , THR A:29 , HIS A:215 , ARG A:219 , PHE A:240 , ASN A:248 , LEU B:6 , SER B:55 , GLY B:56 , SER B:57 , TRP B:88 , THR B:90 , ASP B:159 , CYS B:161 , GLU B:162 , SER B:183 , PHE B:185 , TYR B:186 , SER B:187 , GLU B:329 , ARG B:331 , HOH B:676 , HOH B:705 , HOH B:742 , HOH B:761 , HOH B:864 , HOH B:866 , HOH B:925BINDING SITE FOR RESIDUE G4M B 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3B8X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3B8X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3B8X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3B8X)

(-) Exons   (0, 0)

(no "Exon" information available for 3B8X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:386
 aligned with COLD_ECOCB | D3QY10 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:386
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
           COLD_ECOCB     3 NYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSHHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 388
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3b8xA01 A:3-264 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                   3b8xA02 A:265-388 Aspartate Aminotransferase, domain 1                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh............eeeee...hhhhhhhhhhh..eeeee.........hhhhhhhhh...eeeeeee.hhhh..hhhhhhhhhh....eeeee.......ee..ee......eeeee............eeeee.hhhhhhhhhhhh..........ee...ee.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee..........eeeeee......hhhhhhhhhhhh..........hhhhhhhhhh..eeee...hhhhhhhhhheeeee.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b8x A   3 NYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 388
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      


Chain A from PDB  Type:PROTEIN  Length:386
 aligned with Q9F118_ECOLX | Q9F118 from UniProtKB/TrEMBL  Length:388

    Alignment length:386
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
         Q9F118_ECOLX     3 NYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSHHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 388
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3b8xA01 A:3-264 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                   3b8xA02 A:265-388 Aspartate Aminotransferase, domain 1                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh............eeeee...hhhhhhhhhhh..eeeee.........hhhhhhhhh...eeeeeee.hhhh..hhhhhhhhhh....eeeee.......ee..ee......eeeee............eeeee.hhhhhhhhhhhh..........ee...ee.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee..........eeeeee......hhhhhhhhhhhh..........hhhhhhhhhh..eeee...hhhhhhhhhheeeee.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b8x A   3 NYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 388
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      


Chain B from PDB  Type:PROTEIN  Length:388
 aligned with COLD_ECOCB | D3QY10 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:388
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380        
           COLD_ECOCB     1 MINYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSHHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 388
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3b8xB01 B:1-264 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                     3b8xB02 B:265-388 Aspartate Aminotransferase, domain 1                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh............eeeee...hhhhhhhhhhh..eeeee.........hhhhhhhhh...eeeeeee.hhhh..hhhhhhhhhh....eeeee.......ee..ee......eeeee............eeeee.hhhhhhhhhhhh..........ee...ee...hhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...........eeeeee......hhhhhhhhhhhhh..ee.....hhhhhhhhhh..eeee...hhhhhhhhhheeeee.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b8x B   1 MINYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 388
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380        


Chain B from PDB  Type:PROTEIN  Length:388
 aligned with Q9F118_ECOLX | Q9F118 from UniProtKB/TrEMBL  Length:388

    Alignment length:388
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380        
         Q9F118_ECOLX     1 MINYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSHHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 388
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3b8xB01 B:1-264 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                     3b8xB02 B:265-388 Aspartate Aminotransferase, domain 1                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh............eeeee...hhhhhhhhhhh..eeeee.........hhhhhhhhh...eeeeeee.hhhh..hhhhhhhhhh....eeeee.......ee..ee......eeeee............eeeee.hhhhhhhhhhhh..........ee...ee...hhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...........eeeeee......hhhhhhhhhhhhh..ee.....hhhhhhhhhh..eeee...hhhhhhhhhheeeee.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b8x B   1 MINYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 388
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3B8X)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3B8X)

(-) Gene Ontology  (3, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (COLD_ECOCB | D3QY10)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

Chain A,B   (Q9F118_ECOLX | Q9F118)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008483    transaminase activity    Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COLD_ECOCB | D3QY10: 2gms 2gmu 2r0t
        Q9F118_ECOLX | Q9F118: 3gr9
UniProtKB/TrEMBL
        Q9F118_ECOLX | Q9F118: 2gms 2gmu 2r0t

(-) Related Entries Specified in the PDB File

2gmu STRUCTURE OF UREE
2r0t STRUCTURE OF GDP-4-KETO-6-DEOXYMANNOSE-3-DEHYDRATASE WITH A TRAPPED PLP-GLUTAMATE GEMINAL DIAMINE