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(-) Description

Title :  INTEGRAL MEMBRANE DOMAIN OF AUTOTRANSPORTER HBP
 
Authors :  N. Tajima, S. -Y. Park, J. R. H. Tame
Date :  04 Feb 10  (Deposition) - 07 Jul 10  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta-Barrel, Auto-Proteolytic, Reaction Intermediate, Mutant, Cell Membrane, Cell Outer Membrane, Hydrolase, Membrane, Protease, Secreted, Serine Protease, Transmembrane, Virulence, Intein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. Tajima, F. Kawai, S. Y. Park, J. R. Tame
A Novel Intein-Like Autoproteolytic Mechanism In Autotransporter Proteins.
J. Mol. Biol. V. 402 645 2010
PubMed-ID: 20615416  |  Reference-DOI: 10.1016/J.JMB.2010.06.068

(-) Compounds

Molecule 1 - HEMOGLOBIN-BINDING PROTEASE HBP AUTOTRANSPORTER
    ChainsA, B
    EC Number3.4.21.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentBARREL DOMAIN
    GeneHBP
    MutationYES
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    SynonymHEMOGLOBIN-BINDING PROTEASE HBP, HEMOGLOBIN-BINDING PROTEASE HBP TRANSLOCATOR, HELPER PEPTIDE, HBP, HAEMOGLOBIN PROTEASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3AEH)

(-) Sites  (0, 0)

(no "Site" information available for 3AEH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3AEH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3AEH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3AEH)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AUTOTRANSPORTERPS51208 Autotransporter beta-domain profile.HBP_ECOLX1111-1377
 
  2A:1111-1377
B:1111-1377
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AUTOTRANSPORTERPS51208 Autotransporter beta-domain profile.HBP_ECOLX1111-1377
 
  1A:1111-1377
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AUTOTRANSPORTERPS51208 Autotransporter beta-domain profile.HBP_ECOLX1111-1377
 
  1-
B:1111-1377

(-) Exons   (0, 0)

(no "Exon" information available for 3AEH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:277
 aligned with HBP_ECOLX | O88093 from UniProtKB/Swiss-Prot  Length:1377

    Alignment length:317
                                                                                                                                                                                                                                                                                                                                                   1377  
                                  1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362      1372    |  
           HBP_ECOLX   1063 GKKEWVLDGYQVARNDGQGKAAATFMHISYNNFITEVNNLNKRMGDLRDINGEAGTWVRLLNGSGSADGGFTDHYTLLQMGADRKHELGSMDLFTGVMATYTDTDASADLYSGKTKSWGGGFYASGLFRSGAYFDVIAKYIHNENKYDLNFAGAGKQNFRSHSLYAGAEVGYRYHLTDTTFVEPQAELVWGRLQGQTFNWNDSGMDVSMRRNSVNPLVGRTGVVSGKTFSGKDWSLTARAGLHYEFDLTDSADVHLKDAAGEHQINGRKDSRMLYGVGLNARFGDNTRLGLEVERSAFGKYNTDDAINANIRYSF--    -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author h---------hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh........eeeeeeeeeeeee.....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeee.ee....eeeeeeeeeeeeeeee.---------------.ee..eeeeeeeeeeeeee...eeeeeeeeeeeeeee...----------------.eeeeeeeeeeeeeee...eeeeeeeeeee....eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------AUTOTRANSPORTER  PDB: A:1111-1377 UniProt: 1111-1377                                                                                                                                                                                                                       -- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3aeh A 1072 G---------TMARNDGQGKAAATFMHISYNNFITEVDNLNKRMGDLRDINGEAGTWVRLLNGSGSADGGFTDHYTLLQMGADRKHELGSMDLFTGVMATYTDTDASADLYSGKTKSWGGGFYASGLFRSGAYFDVIAKYIHNENKYDLNFAGAGKQNFRSHSLYAGAEVGYRYHLTDTTFVEPQAELVWGRLQGQ---------------NSVNPLVGRTGVVSGKTFSGKDWSLTARAGLHYEFDLTDS----------------RKDSRMLYGVGLNARFGDNTRLGLEVERSAFGKYNTDDAINANIRYSFLE 1379
                            |        -|     1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252     |   -         - |    1282      1292      1302      1312|        -      1332      1342      1352      1362      1372       
                            |      1073                                                                                                                                                                                     1258            1274                                   1313             1330                                                 
                         1072                                                                                                                                                                                                                                                                                                                            

Chain B from PDB  Type:PROTEIN  Length:277
 aligned with HBP_ECOLX | O88093 from UniProtKB/Swiss-Prot  Length:1377

    Alignment length:317
                                                                                                                                                                                                                                                                                                                                                   1377  
                                  1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362      1372    |  
           HBP_ECOLX   1063 GKKEWVLDGYQVARNDGQGKAAATFMHISYNNFITEVNNLNKRMGDLRDINGEAGTWVRLLNGSGSADGGFTDHYTLLQMGADRKHELGSMDLFTGVMATYTDTDASADLYSGKTKSWGGGFYASGLFRSGAYFDVIAKYIHNENKYDLNFAGAGKQNFRSHSLYAGAEVGYRYHLTDTTFVEPQAELVWGRLQGQTFNWNDSGMDVSMRRNSVNPLVGRTGVVSGKTFSGKDWSLTARAGLHYEFDLTDSADVHLKDAAGEHQINGRKDSRMLYGVGLNARFGDNTRLGLEVERSAFGKYNTDDAINANIRYSF--    -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author h---------hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh........eeeeeeeeeeeee.....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeee.eeee..eeeeeeeeeeeeeeee.---------------.ee..eeeeeeeeeeeeee...eeeeeeeeeeeeeee...----------------.eeeeeeeeeeeeeee...eeeeeeeeeee....eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------AUTOTRANSPORTER  PDB: B:1111-1377 UniProt: 1111-1377                                                                                                                                                                                                                       -- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3aeh B 1072 G---------TMARNDGQGKAAATFMHISYNNFITEVDNLNKRMGDLRDINGEAGTWVRLLNGSGSADGGFTDHYTLLQMGADRKHELGSMDLFTGVMATYTDTDASADLYSGKTKSWGGGFYASGLFRSGAYFDVIAKYIHNENKYDLNFAGAGKQNFRSHSLYAGAEVGYRYHLTDTTFVEPQAELVWGRLQGQ---------------NSVNPLVGRTGVVSGKTFSGKDWSLTARAGLHYEFDLTDS----------------RKDSRMLYGVGLNARFGDNTRLGLEVERSAFGKYNTDDAINANIRYSFLE 1379
                            |        -|     1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252     |   -         - |    1282      1292      1302      1312|        -      1332      1342      1352      1362      1372       
                         1072      1073                                                                                                                                                                                     1258            1274                                   1313             1330                                                 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3AEH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3AEH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3AEH)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (HBP_ECOLX | O88093)
molecular function
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HBP_ECOLX | O880931wxr 3ak5

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