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(-) Description

Title :  CRYSTAL STRUCTURE OF SE-MET LABELED BETA-GLUCOSIDASE FROM KLUYVEROMYCES MARXIANUS
 
Authors :  E. Yoshida, M. Hidaka, S. Fushinobu, T. Katayama, H. Kumagai
Date :  25 Dec 09  (Deposition) - 11 Aug 10  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Glycoside Hydrolase Family3 Beta-Glucosidase, Pa14 Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Yoshida, M. Hidaka, S. Fushinobu, T. Koyanagi, H. Minami, H. Tamaki M. Kitaoka, T. Katayama, H. Kumagai
Role Of A Pa14 Domain In Determining Substrate Specificity Of A Glycoside Hydrolase Family 3 Beta-Glucosidase From Kluyveromyces Marxianus.
Biochem. J. V. 431 39 2010
PubMed-ID: 20662765  |  Reference-DOI: 10.1042/BJ20100351
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BETA-GLUCOSIDASE I
    Chains: A, B, C, D
    EC Number: 3.2.1.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BGL, BGLI
    Organism Common: YEAST
    Organism Scientific: KLUYVEROMYCES MARXIANUS
    Organism Taxid: 4911
    Strain: NBRC1777

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 48)

Asymmetric/Biological Unit (2, 48)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2MSE40Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:28 , ASP A:45 , LYS A:146 , MSE A:190 , ASP A:225 , TRP A:226 , SER A:356 , HOH A:1983 , HOH A:2266BINDING SITE FOR RESIDUE GOL A 5001
2AC2SOFTWAREPHE A:55 , PHE A:56 , ASP A:57 , GLY A:58 , VAL A:437 , ARG A:439 , ASN A:441 , HOH A:1152 , HOH A:1855BINDING SITE FOR RESIDUE GOL A 5002
3AC3SOFTWARELYS A:665 , GLY A:715 , TYR A:716 , GLY A:717 , THR A:823 , SER A:824 , ASP A:827 , HOH A:1130 , HOH A:1886BINDING SITE FOR RESIDUE GOL A 5003
4AC4SOFTWAREGLN A:137 , ALA A:184 , ASN A:185 , HOH A:2285 , HOH A:2674 , HOH A:2727 , HOH A:2749BINDING SITE FOR RESIDUE GOL A 5004
5AC5SOFTWAREASP B:45 , LYS B:146 , MSE B:190 , ASP B:225 , TRP B:226 , SER B:356 , HOH B:961 , HOH B:2365BINDING SITE FOR RESIDUE GOL B 5005
6AC6SOFTWAREPHE B:56 , ASP B:57 , VAL B:437 , ASN B:438 , ARG B:439 , ASN B:441 , VAL B:442 , HOH B:1246BINDING SITE FOR RESIDUE GOL B 5006
7AC7SOFTWAREASP C:45 , LEU C:99 , LYS C:146 , MSE C:190 , ASP C:225 , TRP C:226 , SER C:356 , HOH C:1203 , HOH C:1830BINDING SITE FOR RESIDUE GOL C 5007
8AC8SOFTWARETRP D:28 , ASP D:45 , LEU D:99 , LYS D:146 , MSE D:190 , ASP D:225 , TRP D:226 , HOH D:1360BINDING SITE FOR RESIDUE GOL D 5008

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ABZ)

(-) Cis Peptide Bonds  (29, 29)

Asymmetric/Biological Unit
No.Residues
1Asp A:45 -Gly A:46
2Gly A:100 -Pro A:101
3Lys A:146 -His A:147
4Phe A:148 -Val A:149
5Phe A:244 -Pro A:245
6Gly A:246 -Pro A:247
7Leu A:331 -Pro A:332
8Asp B:45 -Gly B:46
9Gly B:100 -Pro B:101
10Lys B:146 -His B:147
11Phe B:148 -Val B:149
12Phe B:244 -Pro B:245
13Gly B:246 -Pro B:247
14Leu B:331 -Pro B:332
15Tyr B:482 -Gly B:483
16Asp C:45 -Gly C:46
17Gly C:100 -Pro C:101
18Lys C:146 -His C:147
19Phe C:148 -Val C:149
20Phe C:244 -Pro C:245
21Gly C:246 -Pro C:247
22Leu C:331 -Pro C:332
23Asp D:45 -Gly D:46
24Gly D:100 -Pro D:101
25Lys D:146 -His D:147
26Phe D:148 -Val D:149
27Phe D:244 -Pro D:245
28Gly D:246 -Pro D:247
29Leu D:331 -Pro D:332

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ABZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ABZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3ABZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:844
 aligned with D1GCC6_KLUMA | D1GCC6 from UniProtKB/TrEMBL  Length:845

    Alignment length:844
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841    
         D1GCC6_KLUMA     2 SKFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLMAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGIAATVKHFVCNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEFKVEKELYWKGL 845
               SCOP domains d3abza1 A:2-299 Beta-glucosidase                                                                                                                                                                                                                                                                          d3abza2 A:300-387,A:560-720 Beta-glucosidase middle domain                              d3abza3 A:388-559 Beta-glucosidase PA14 domain                                                                                                                              d3abza2 A:300-387,A:560-720 Beta-glucosidase middle domain                                                                                                       d3abza4 A:721-845 Beta-glucosidase C-terminal domain                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh..........hhhhh.....eee....................hhhhhhhh.hhhhhhhhhhhhhhhhhhh...eee.............hhhhh...hhhhhhhhhhhhhhhhhhh....eeeee............eee.hhhhhhhh.hhhhhhhhhhhh..eeee...ee..ee...hhhhhh...........eee........hhhhhhhh............hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhheeeee............eeee.......................hhhhhhhhhhh...eee...........hhhhh..............eeeeee..............eeeee...eee................eeeeeeee.....eeeeeeeeee.eeeeee..eeeeee.................eeeeeee.....eeeeeeee..............eeeeeeee..hhhhhhhhhhhhhhh..eeeeeee...................hhhhhhhhhhhhh..eeeeee........hhhhh.eeee......hhhhhhhhhhh...............hhhhh...........eee.......hhhhhhhhh...............eeeeeeeeee...eeeeeeeeee......eeeeeeeeeee..........eeeeeeeeee....eeeeeeeeehhhhhheee....eeee..eeeeeeee.....eeeeeeeee...eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abz A   2 SKFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLmAKESIAKNAAVILGPTTNmQRGPLGGRGFESFSEDPYLAGmATSSVVKGmQGEGIAATVKHFVCNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCImTAYNKVNGEHCSQSKKLLIDILRDEWKWDGmLmSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKmIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASmNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENmDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEFKVEKELYWKGL 845
                                    11        21        31        41        51        61        71        81    |   91       101   |   111       121     | 131    |  141       151       161       171       181       191       201       211       221 |     231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591     | 601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841    
                                                                                                               86-MSE            105-MSE               127-MSE  136-MSE                                               190-MSE                        221-MSE                                                     281-MSE                                                                       359-MSE                                                                                                                                                                                                                                       597-MSE                                                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                       223-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:810
 aligned with D1GCC6_KLUMA | D1GCC6 from UniProtKB/TrEMBL  Length:845

    Alignment length:844
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841    
         D1GCC6_KLUMA     2 SKFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLMAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGIAATVKHFVCNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEFKVEKELYWKGL 845
               SCOP domains d3abzb1 B:2-299 Beta-glucosidase                                                                                                                                                                                                                                                                          d3abzb2 B:300-387,B:560-720 Beta-glucosidase middle domain                              d3abzb3 B:38    8-559 Beta-glucosidase P    A14 domain                                                                                                                      d3abzb2 B:300-387,B:560-720 Beta-glucosidase middle domain                                                                                                       d3abzb4 B:721-845 Beta-glucosidase C-terminal domain                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh..........hhhhh.....eee....................hhhhhhh..hhhhhhhhhhhhhhhhhh....eee.............hhhhh...hhhhhhhhhhhhhhhhhhh....eeeee............eee.hhhhhhhh.hhhhhhhhhhhh..eeee...ee..ee...hhhhhh...........eee........hhhhhhhh............hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhheeeee............eeee.......................hhhhhhhhhhh...eee...........hhhhh.----.........eeeeee..hhhhh..----..eeee...ee...........----..eeeeeeee.....eeeeeeeee..eeeeee..eeee.--------------....eeeeeee.....eeeeeeee....--------...eeeeeee..hhhhhhhhhhhhhhh..eeeeeee...................hhhhhhhhhhhhh..eeeeee........hhhhh.eeee......hhhhhhhhhhh...............hhhhh...........eee.......hhhhhhhhh...............eeeeeeeeee...eeeeeeeeee......eeeeeeeeeee..........eeeeeeeeee....eeeeeeeeehhhhhheee....eeee..eeeeeeee.....eeeeeeeee...eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abz B   2 SKFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLmAKESIAKNAAVILGPTTNmQRGPLGGRGFESFSEDPYLAGmATSSVVKGmQGEGIAATVKHFVCNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCImTAYNKVNGEHCSQSKKLLIDILRDEWKWDGmLmSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKmIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASmNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSL----KPADAENSGLIAKFYSNPVEERSD----FHVTKVNRSNVHLFDFKHEKVD----YFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIID--------------GTKERTKKLTLKKGQVYNVRVEYGSGPT--------AGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENmDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEFKVEKELYWKGL 845
                                    11        21        31        41        51        61        71        81    |   91       101   |   111       121     | 131    |  141       151       161       171       181       191       201       211       221 |     231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       | -  |    411       421     |   -|      441       451 |    |461       471       481       491    |    -       511       521       531      |  -     | 551       561       571       581       591     | 601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841    
                                                                                                               86-MSE            105-MSE               127-MSE  136-MSE                                               190-MSE                        221-MSE                                                     281-MSE                                                                       359-MSE                                 399  404                    427  432                  453  458                                   496            511                        538      547                                               597-MSE                                                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                       223-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:836
 aligned with D1GCC6_KLUMA | D1GCC6 from UniProtKB/TrEMBL  Length:845

    Alignment length:844
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841    
         D1GCC6_KLUMA     2 SKFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLMAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGIAATVKHFVCNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEFKVEKELYWKGL 845
               SCOP domains d3abzc1 C:2-299 Beta-glucosidase                                                                                                                                                                                                                                                                          d3abzc2 C:300-387,C:560-720 Beta-glucosidase middle domain                              d3abzc3 C:388-559 Beta-glucosidase PA14 domain                                                                                                                              d3abzc2 C:300-387,C:560-720 Beta-glucosidase middle domain                                                                                                       d3abzc4 C:721-845 Beta-glucosidase C-terminal domain                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh...........hhhhh.....ee.....................hhhhhhhh.hhhhhhhhhhhhhhhhhhh...ee..............hhhhh...hhhhhhhhhhhhhhhhhhh..eeeeeee............eee.hhhhhhhh.hhhhhhhhhhhh..eeee...ee..ee...hhhhhh...........eee........hhhhhhh.............hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhheeeee............eeee.......................hhhhhhhhhhh...eee...........hhhhh..............eeeeee..............eeeee...eee................eeeeeeee.....eeeeeeeeee.eeeeee..eeeeee.................eeeeeee.....eeeeeeee...--------...eeeeeeee..hhhhhhhhhhhhhhh..eeeeeee...................hhhhhhhhhhhhh...eeeee........hhhhh.eeee......hhhhhhhhhhh...............hhhhh...........eee.......hhhhhhhhh...............eeeeeeeeeee..eeeeeeeeee......eeeeeeeeeee..........eeeeeeeeee....eeeeeeeehhhhhhheee....eeee..eeeeeeee.....eeeeeeeee...eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abz C   2 SKFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLmAKESIAKNAAVILGPTTNmQRGPLGGRGFESFSEDPYLAGmATSSVVKGmQGEGIAATVKHFVCNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCImTAYNKVNGEHCSQSKKLLIDILRDEWKWDGmLmSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKmIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASmNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGP--------GAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENmDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEFKVEKELYWKGL 845
                                    11        21        31        41        51        61        71        81    |   91       101   |   111       121     | 131    |  141       151       161       171       181       191       201       211       221 |     231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531     |   -    |  551       561       571       581       591     | 601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841    
                                                                                                               86-MSE            105-MSE               127-MSE  136-MSE                                               190-MSE                        221-MSE                                                     281-MSE                                                                       359-MSE                                                                                                                                                                           537      546                                                597-MSE                                                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                       223-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:833
 aligned with D1GCC6_KLUMA | D1GCC6 from UniProtKB/TrEMBL  Length:845

    Alignment length:844
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841    
         D1GCC6_KLUMA     2 SKFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLMAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGIAATVKHFVCNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEFKVEKELYWKGL 845
               SCOP domains d3abzd1 D:2-299 Beta-glucosidase                                                                                                                                                                                                                                                                          d3abzd2 D:300-387,D:560-720 Beta-glucosidase middle domain                              d3abzd3 D:388-559 Beta-glucosidase P     A14 domain                                                                                                                         d3abzd2 D:300-387,D:560-720 Beta-glucosidase middle domain                                                                                                       d3abzd4 D:721-845 Beta-glucosidase C-terminal domain                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh..........hhhhh.....ee.....................hhhhhhhh.hhhhhhhhhhhhhhhhhhh...ee..............hhhhh...hhhhhhhhhhhhhhhhhhh..eeeeeee............eee.hhhhhhhh.hhhhhhhhhhhh..eeee...ee..ee...hhhhhh...........eee........hhhhhhhh............hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhheeeee............eeee.......................hhhhhhhhhhh...eee...........hhhhh..............eeeeee.....-----....eeeee...eee................eeeeeeee.....eeeeeeeeee.eeeeee...eeeee.......hhhhhh....eeeeeee.....eeeeeeee.hhhh------...eeeeeeee..hhhhhhhhhhhhhhh..eeeeeee...................hhhhhhhhhhhhh..eeeeee........hhhhh.eeee......hhhhhhhhhhh...............hhhhh...........eee.......hhhhhhhhh...............eeeeeeeeee...eeeeeeeeee......eeeeeeeeeee..........eeeeeeeeee....eeeeeeeeehhhhhheee....eeee..eeeeeeee.....eeeeeeeee...eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abz D   2 SKFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLmAKESIAKNAAVILGPTTNmQRGPLGGRGFESFSEDPYLAGmATSSVVKGmQGEGIAATVKHFVCNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCImTAYNKVNGEHCSQSKKLLIDILRDEWKWDGmLmSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKmIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASmNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVE-----EEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTS------GAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENmDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEFKVEKELYWKGL 845
                                    11        21        31        41        51        61        71        81    |   91       101   |   111       121     | 131    |  141       151       161       171       181       191       201       211       221 |     231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 |     431       441       451       461       471       481       491       501       511       521       531       | -    |  551       561       571       581       591     | 601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841    
                                                                                                               86-MSE            105-MSE               127-MSE  136-MSE                                               190-MSE                        221-MSE                                                     281-MSE                                                                       359-MSE                                                         423   429                                                                                                           539    546                                                597-MSE                                                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                       223-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 16)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ABZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ABZ)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (D1GCC6_KLUMA | D1GCC6)
molecular function
    GO:0008422    beta-glucosidase activity    Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0102483    scopolin beta-glucosidase activity    Catalysis of the reaction: H2O + scopolin <=> beta-D-glucose + scopoletin
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0030245    cellulose catabolic process    The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000272    polysaccharide catabolic process    The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D1GCC6_KLUMA | D1GCC6: 3ac0

(-) Related Entries Specified in the PDB File

3ac0