3A69 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Title :   ATOMIC MODEL OF THE BACTERIAL FLAGELLAR HOOK BASED ON DOCKING AN X-RAY DERIVED STRUCTURE AND TERMINAL TWO ALPHA-HELICES INTO AN 7.1 ANGSTROM RESOLUTION CRYOEM MAP

Authors :   T. Fujii, T. Kato, K. Namba

Date :   26 Aug 09 (Deposition) - 15 Dec 09 (Release) - 15 Dec 09 (Revision)

Method :   ELECTRON MICROSCOPY

Resolution :   7.10

Chains :   Asym. Unit : A
Biol. Unit 1: A  (11x)

Keywords :   The Bacterial Flagellar Motor, Universal Joint, Bacterial Flagellum, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Fujii, T. Kato, K. Namba
Specific Arrangement Of Alpha-Helical Coiled Coils In The Core Domain Of The Bacterial Flagellar Hook For The Universal Joint Function
Structure V. 17 1485 2009
PubMed-ID: 19913483 | Reference-DOI: 10.1016/J.STR.2009.08.017
(for further references see the PDB file header)

Molecule 1 - FLAGELLAR HOOK PROTEIN FLGE
	Chains	:	A
	Organism Scientific	:	SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
	Organism Taxid	:	90371
	Strain	:	SJW880

		1
Asymmetric Unit	:	A
Biological Unit 1 (11x)	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3A69)

(no "Site" information available for 3A69)

(no "SS Bond" information available for 3A69)

Asymmetric Unit

No.	Residues
1	Thr A:123	-	Pro A:124
2	Thr A:167	-	Pro A:168
3	Pro A:285	-	Gly A:286

(no "SAP(SNP)/Variant" information available for 3A69)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAGELLA_BB_ROD	PS00588	Flagella basal body rod proteins signature.	FLGE_SALTY	9-29	1	A:8-24

Biological Unit 1 (1, 11)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAGELLA_BB_ROD	PS00588	Flagella basal body rod proteins signature.	FLGE_SALTY	9-29	11	A:8-24

(no "Exon" information available for 3A69)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:347
 aligned with FLGE_SALTY | P0A1J1 from UniProtKB/Swiss-Prot  Length:403

    Alignment length:402
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  
           FLGE_SALTY     2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 403
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh----------------------------------------------.ee.......eeeee.....eeee...eeee.....ee.....eeeeee..............ee..............eeeeeeeee....................eeeeeeee.....eeeeeeeeeeee..eeeeeeee.............eeeee.....eee..eeeee..........eeeee....eee.....eeeeeee.......eeeeee....eeeeee....eeeeeee.eee..hhhhhee.....ee........eee............---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------FLAGELLA_BB_ROD      -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a69 A   1 SFSQAVSGLNAAATNLDVIGNNIA----------------------------------------------GLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTN---------LSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402
                                    10        20   |     -         -         -         -         -|       80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350      |  -      |370       380       390       400  
                                                  24                                             71                                                                                                                                                                                                                                                                                           357       367

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3A69)

(no "CATH Domain" information available for 3A69)

(no "Pfam Domain" information available for 3A69)

Asymmetric Unit(hide GO term definitions)

Chain A (FLGE_SALTY | P0A1J1)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0071973	bacterial-type flagellum-dependent cell motility	Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
	GO:0071978	bacterial-type flagellum-dependent swarming motility	Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.
cellular component
	GO:0009288	bacterial-type flagellum	A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
	GO:0009425	bacterial-type flagellum basal body	One of the three major substructures of the flagellin-based flagellum; a structure consisting of a rod, a series of rings, the Mot proteins, the switch complex and the flagellum-specific export apparatus. The rings anchor the flagellum to the cytoplasmic membrane (MS ring), the peptidoglycan (P ring) and the outer membrane (L ring). Examples of this component are found in bacteria.
	GO:0009424	bacterial-type flagellum hook	The portion of the flagellum that connects the filament to the basal body. Examples of this component are found in bacteria.

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	Ligands, Modified Residues, Ions
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	Sites
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	Cis Peptide Bonds
		Pro A:285 - Gly A:286	[ RasMol ]
		Thr A:123 - Pro A:124	[ RasMol ]
		Thr A:167 - Pro A:168	[ RasMol ]

Biological Unit
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	3a69
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	FLGE_SALTY \| P0A1J1	:	1wlg 2bgy 2bgz

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Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

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