3A50 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   STRUCTURE OF CYTOCHROME P450 VDH MUTANT (VDH-K1) OBTAINED BY DIRECTED EVOLUTION WITH BOUND VITAMIN D3

Authors :   Y. Yasutake, Y. Fujii, W. K. Cheon, A. Arisawa, T. Tamura

Date :   24 Jul 09 (Deposition) - 28 Jul 10 (Release) - 17 Nov 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)

Keywords :   Cytochrome P450, Vitamin D3 Hydroxylase, Hemoprotein, Monooxygenase, Directed Evolution, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Yasutake, Y. Fujii, T. Nishioka, W. K. Cheon, A. Arisawa, T. Tamura
Structural Evidence For Enhancement Of Sequential Vitamin D Hydroxylation Activities By Directed Evolution Of Cytochrom P450 Vitamin D3 Hydroxylase
J. Biol. Chem. V. 285 31193 2010
PubMed-ID: 20667833 | Reference-DOI: 10.1074/JBC.M110.147009

Molecule 1 - VITAMIN D HYDROXYLASE
	Chains	:	A, B, C, D, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	VDH
	Mutation	:	YES
	Organism Scientific	:	PSEUDONOCARDIA AUTOTROPHICA
	Organism Taxid	:	2074
	Strain	:	NBRC 12743

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	D	E
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 24)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	CA	6	Ligand/Ion	CALCIUM ION
3	GOL	2	Ligand/Ion	GLYCEROL
4	HEM	5	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
5	VD3	5	Ligand/Ion	(1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL

Biological Unit 1 (4, 5)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	GOL	2	Ligand/Ion	GLYCEROL
4	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
5	VD3	1	Ligand/Ion	(1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	GOL	-1	Ligand/Ion	GLYCEROL
4	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
5	VD3	1	Ligand/Ion	(1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL

Biological Unit 3 (3, 4)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	GOL	-1	Ligand/Ion	GLYCEROL
4	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
5	VD3	1	Ligand/Ion	(1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL

Biological Unit 4 (3, 3)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	GOL	-1	Ligand/Ion	GLYCEROL
4	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
5	VD3	1	Ligand/Ion	(1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL

Biological Unit 5 (3, 4)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	GOL	-1	Ligand/Ion	GLYCEROL
4	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
5	VD3	1	Ligand/Ion	(1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:58 , LYS A:65 , ILE A:88 , HIS A:95 , ARG A:99 , PHE A:106 , LEU A:232 , LEU A:233 , ALA A:236 , THR A:240 , THR A:241 , ALA A:286 , PRO A:287 , ARG A:289 , LEU A:312 , PHE A:339 , PHE A:340 , GLY A:341 , ILE A:344 , HIS A:345 , CYS A:347 , GLY A:349 , ALA A:353 , HOH A:428 , VD3 A:2001	BINDING SITE FOR RESIDUE HEM A 412
02	AC2	SOFTWARE	MET A:86 , ILE A:88 , LYS A:180 , ASN A:181 , LEU A:232 , HEM A:412 , HOH A:549	BINDING SITE FOR RESIDUE VD3 A 2001
03	AC3	SOFTWARE	HIS A:342 , GLY A:343 , PHE A:346 , HOH D:522 , HOH D:693	BINDING SITE FOR RESIDUE ACT A 4006
04	AC4	SOFTWARE	ASP A:204 , HOH A:572 , HOH A:596 , HOH A:601 , GOL A:3002 , HOH E:695	BINDING SITE FOR RESIDUE CA A 2501
05	AC5	SOFTWARE	GLY A:128 , HOH A:818 , HOH A:993 , HOH A:1027 , HOH B:650	BINDING SITE FOR RESIDUE CA A 2505
06	AC6	SOFTWARE	ASP A:320 , ASP D:320 , HOH D:892	BINDING SITE FOR RESIDUE CA A 2506
07	AC7	SOFTWARE	ASP A:53 , GLU A:56 , HOH A:452 , HOH A:537 , HOH A:575 , ARG D:55 , HOH D:425	BINDING SITE FOR RESIDUE GOL A 3001
08	AC8	SOFTWARE	ASP A:204 , SER A:209 , HOH A:662 , HOH A:989 , CA A:2501 , ARG E:70 , PRO E:72 , ALA E:304 , HOH E:695 , HOH E:1013	BINDING SITE FOR RESIDUE GOL A 3002
09	AC9	SOFTWARE	PHE B:58 , LYS B:65 , ILE B:88 , HIS B:95 , ARG B:99 , PHE B:106 , LEU B:233 , ALA B:236 , THR B:240 , THR B:241 , VAL B:283 , ALA B:286 , PRO B:287 , ARG B:289 , LEU B:312 , PHE B:339 , PHE B:340 , GLY B:341 , ILE B:344 , HIS B:345 , CYS B:347 , GLY B:349 , ALA B:353 , HOH B:425 , VD3 B:2001	BINDING SITE FOR RESIDUE HEM B 412
10	BC1	SOFTWARE	THR B:84 , MET B:86 , LEU B:171 , LYS B:180 , ASN B:181 , MET B:184 , ILE B:235 , THR B:240 , HEM B:412	BINDING SITE FOR RESIDUE VD3 B 2001
11	BC2	SOFTWARE	PHE C:58 , LYS C:65 , MET C:87 , ILE C:88 , HIS C:95 , ARG C:99 , PHE C:106 , LEU C:232 , ALA C:236 , THR C:240 , THR C:241 , ALA C:286 , PRO C:287 , ARG C:289 , LEU C:312 , PHE C:339 , PHE C:340 , GLY C:341 , ILE C:344 , HIS C:345 , CYS C:347 , LEU C:348 , GLY C:349 , ALA C:353 , HOH C:427 , VD3 C:2001	BINDING SITE FOR RESIDUE HEM C 412
12	BC3	SOFTWARE	THR C:84 , MET C:86 , LYS C:180 , ASN C:181 , ILE C:235 , THR C:240 , HEM C:412	BINDING SITE FOR RESIDUE VD3 C 2001
13	BC4	SOFTWARE	ARG A:70 , PRO A:72 , HOH A:532 , ASP C:204 , HOH C:648 , CA C:2503	BINDING SITE FOR RESIDUE ACT C 4004
14	BC5	SOFTWARE	HIS C:342 , GLY C:343 , PHE C:346 , HOH C:445	BINDING SITE FOR RESIDUE ACT C 4007
15	BC6	SOFTWARE	HOH A:451 , HOH A:532 , ASP C:204 , HOH C:437 , HOH C:470 , ACT C:4004	BINDING SITE FOR RESIDUE CA C 2503
16	BC7	SOFTWARE	PHE D:58 , LYS D:65 , MET D:87 , ILE D:88 , HIS D:95 , ARG D:99 , PHE D:106 , ALA D:236 , THR D:240 , THR D:241 , VAL D:283 , ALA D:286 , PRO D:287 , ARG D:289 , LEU D:312 , PHE D:339 , PHE D:340 , GLY D:341 , ILE D:344 , HIS D:345 , CYS D:347 , GLY D:349 , ALA D:353 , HOH D:422 , VD3 D:2001	BINDING SITE FOR RESIDUE HEM D 412
17	BC8	SOFTWARE	MET D:86 , LYS D:180 , ASN D:181 , MET D:184 , LEU D:232 , ILE D:235 , THR D:240 , HEM D:412	BINDING SITE FOR RESIDUE VD3 D 2001
18	BC9	SOFTWARE	HIS D:342 , GLY D:343 , PHE D:346 , HOH D:457 , HOH D:502	BINDING SITE FOR RESIDUE ACT D 4001
19	CC1	SOFTWARE	ASP D:204 , HOH D:883 , HOH D:884	BINDING SITE FOR RESIDUE CA D 2502
20	CC2	SOFTWARE	PHE E:58 , LYS E:65 , MET E:87 , ILE E:88 , HIS E:95 , ARG E:99 , PHE E:106 , ALA E:236 , THR E:240 , THR E:241 , VAL E:283 , ALA E:286 , PRO E:287 , ARG E:289 , LEU E:312 , PHE E:339 , PHE E:340 , GLY E:341 , ILE E:344 , HIS E:345 , CYS E:347 , GLY E:349 , ALA E:353 , HOH E:422 , VD3 E:2001	BINDING SITE FOR RESIDUE HEM E 412
21	CC3	SOFTWARE	ILE E:88 , LYS E:180 , ASN E:181 , LEU E:232 , LEU E:387 , HEM E:412	BINDING SITE FOR RESIDUE VD3 E 2001
22	CC4	SOFTWARE	ARG C:70 , ASP E:204 , HOH E:888 , CA E:2504	BINDING SITE FOR RESIDUE ACT E 4005
23	CC5	SOFTWARE	HIS E:342 , GLY E:343 , PHE E:346	BINDING SITE FOR RESIDUE ACT E 4008
24	CC6	SOFTWARE	HOH C:659 , ASP E:204 , HOH E:886 , HOH E:887 , ACT E:4005	BINDING SITE FOR RESIDUE CA E 2504

(no "SS Bond" information available for 3A50)

Asymmetric Unit

No.	Residues
1	Pro A:92	-	Pro A:93
2	Pro B:92	-	Pro B:93
3	Pro C:92	-	Pro C:93
4	Pro D:92	-	Pro D:93
5	Pro E:92	-	Pro E:93

(no "SAP(SNP)/Variant" information available for 3A50)

Asymmetric Unit (1, 5)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CPVDH_PSEAH	340-349	5	A:340-349 B:340-349 C:340-349 D:340-349 E:340-349

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CPVDH_PSEAH	340-349	1	A:340-349 - - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CPVDH_PSEAH	340-349	1	- B:340-349 - - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CPVDH_PSEAH	340-349	1	- - C:340-349 - -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CPVDH_PSEAH	340-349	1	- - - D:340-349 -

Biological Unit 5 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTOCHROME_P450	PS00086	Cytochrome P450 cysteine heme-iron ligand signature.	CPVDH_PSEAH	340-349	1	- - - - E:340-349

(no "Exon" information available for 3A50)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:402
 aligned with CPVDH_PSEAH | C4B644 from UniProtKB/Swiss-Prot  Length:403

    Alignment length:402
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  
          CPVDH_PSEAH     2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRSA 403
               SCOP domains d3a50a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhh..hhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhh....ee.hhhhhhhhhhh.........hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh......eehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh........eee...eee..eee....eeeehhhhhh.........................hhhhh..hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a50 A   2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHRLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGLPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDMDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRRSTLVRGLSRMPVTMGPRSA 403
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401

Chain B from PDB  Type:PROTEIN  Length:402
 aligned with CPVDH_PSEAH | C4B644 from UniProtKB/Swiss-Prot  Length:403

    Alignment length:402
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  
          CPVDH_PSEAH     2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRSA 403
               SCOP domains d3a50b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.......ee.hhhhh..hhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhh....ee.hhhhhhhhhhhh........hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh........eee...eee..eee....eeeehhhhhh................................hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a50 B   2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHRLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGLPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDMDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRRSTLVRGLSRMPVTMGPRSA 403
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401

Chain C from PDB  Type:PROTEIN  Length:401
 aligned with CPVDH_PSEAH | C4B644 from UniProtKB/Swiss-Prot  Length:403

    Alignment length:401
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401 
          CPVDH_PSEAH     2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRS 402
               SCOP domains d3a50c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.......ee.hhhhhh.hhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhhh..ee.hhhhhhhhhhhh........hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh........eee...eee..eee....eeeehhhhhh................................hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a50 C   2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHRLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGLPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDMDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRRSTLVRGLSRMPVTMGPRS 402
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401

Chain D from PDB  Type:PROTEIN  Length:401
 aligned with CPVDH_PSEAH | C4B644 from UniProtKB/Swiss-Prot  Length:403

    Alignment length:401
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401 
          CPVDH_PSEAH     2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRS 402
               SCOP domains d3a50d_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.......ee.hhhhh..hhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhhh..ee.hhhhhhhhhhh.........hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh......eehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh........eee...eee..eee....eeeehhhhhh................................hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a50 D   2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHRLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGLPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDMDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRRSTLVRGLSRMPVTMGPRS 402
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401

Chain E from PDB  Type:PROTEIN  Length:401
 aligned with CPVDH_PSEAH | C4B644 from UniProtKB/Swiss-Prot  Length:403

    Alignment length:401
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401 
          CPVDH_PSEAH     2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRS 402
               SCOP domains d3a50e_ E: automated matches                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.......ee.hhhhhh.hhhhhhhhhhhh.eeee......eeee.hhhhhhhhhh...ee.hhhhhhhhhhh.........hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh........eee...eee..eee....eeeehhhhhh................................hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a50 E   2 ALTTTGTEQHDLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHRLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFTVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGLPAEDRDDFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSLLAVSDMDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRRSTLVRGLSRMPVTMGPRS 402
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Cytochrome P450 (480)

Superfamily: Cytochrome P450 (480)

Family: automated matches (157)

Protein domain: automated matches (157)

Pseudonocardia autotrophica [TaxId: 2074] (6)

1a	d3a50a_	A:
1b	d3a50e_	E:
1c	d3a50b_	B:
1d	d3a50c_	C:
1e	d3a50d_	D:

(no "CATH Domain" information available for 3A50)

(no "Pfam Domain" information available for 3A50)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E (CPVDH_PSEAH | C4B644)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	3a50
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UniProtKB/Swiss-Prot
	CPVDH_PSEAH \| C4B644	:	3a4g 3a4h 3a4z 3a51 3vrm 5gnl 5gnm

3a4g	WILD-TYPE VDH
3a4h	WILD-TYPE VDH
3a4z
3a51

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 24)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

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