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(-) Description

Title :  THE OXIDOREDUCTASE NMDSBA1 FROM N. MENINGITIDIS
 
Authors :  J. P. Vivian, J. Scoullar, S. Bushell, T. Beddoe, M. C. J. Wilce, E. Byres T. P. Boyle, K. Rimmer, B. Doak, J. S. Simpson, B. Graham, B. Heras, C. M. J. Rossjohn, M. J. Scanlon
Date :  19 Jun 09  (Deposition) - 20 Oct 09  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Thioredoxin-Like, Dsba Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Vivian, J. Scoullar, K. Rimmer, S. R. Bushell, T. Beddoe, M. C. J. Wilce, E. Byres, T. P. Boyle, B. Doak, J. S. Simpson, B. Graham, B. Heras, C. M. Kahler, J. Rossjohn, M. J. Scanlon
Structure And Function Of The Oxidoreductase Dsba1 From Neisseria Meningitidis
J. Mol. Biol. V. 394 931 2009
PubMed-ID: 19815019  |  Reference-DOI: 10.1016/J.JMB.2009.09.065

(-) Compounds

Molecule 1
    Chains: A, B, C, D, E, F
    EC Number: 5.3.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET45B
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: NMDSBA3 RESIDUES 42-232
    Gene: DSBA-1
    Organism Scientific: NEISSERIA MENINGITIDIS SEROGROUP B
    Organism Taxid: 491
    Strain: SEROGROUP B
    Synonym: NMDSBA1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3A3T)

(-) Sites  (0, 0)

(no "Site" information available for 3A3T)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:57 -A:60
2B:57 -B:60
3C:57 -C:60
4D:57 -D:60
5E:57 -E:60
6F:57 -F:60

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Thr A:176 -Pro A:177
2Thr B:176 -Pro B:177
3Thr C:176 -Pro C:177
4Thr D:176 -Pro D:177
5Thr E:176 -Pro E:177
6Thr F:176 -Pro F:177

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3A3T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3A3T)

(-) Exons   (0, 0)

(no "Exon" information available for 3A3T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:193
 aligned with Q9K189_NEIMB | Q9K189 from UniProtKB/TrEMBL  Length:232

    Alignment length:202
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228  
         Q9K189_NEIMB    29 ADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 230
               SCOP domains d3a3         ta_ A: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---------........eee............eeeeeee...hhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...eee...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a3t A  -4 DDDK---------AGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 212
                               |     -   |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
                              -1        24                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:193
 aligned with Q9K189_NEIMB | Q9K189 from UniProtKB/TrEMBL  Length:232

    Alignment length:202
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228  
         Q9K189_NEIMB    29 ADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 230
               SCOP domains d3a3         tb_ B: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---------........eee............eeeeeee...hhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...eee...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a3t B  -4 DDDK---------AGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 212
                               |     -   |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
                              -1        24                                                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:193
 aligned with Q9K189_NEIMB | Q9K189 from UniProtKB/TrEMBL  Length:232

    Alignment length:202
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228  
         Q9K189_NEIMB    29 ADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 230
               SCOP domains d3a3         tc_ C: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---------........eee............eeeeeee...hhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...eee...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a3t C  -4 DDDK---------AGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 212
                               |     -   |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
                              -1        24                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:193
 aligned with Q9K189_NEIMB | Q9K189 from UniProtKB/TrEMBL  Length:232

    Alignment length:202
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228  
         Q9K189_NEIMB    29 ADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 230
               SCOP domains d3a3         td_ D: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---------........eee............eeeeeee...hhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...eee...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a3t D  -4 DDDK---------AGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 212
                               |     -   |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
                              -1        24                                                                                                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:193
 aligned with Q9K189_NEIMB | Q9K189 from UniProtKB/TrEMBL  Length:232

    Alignment length:202
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228  
         Q9K189_NEIMB    29 ADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 230
               SCOP domains d3a3         te_ E: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---------........eee............eeeeeee...hhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...eee...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a3t E  -4 DDDK---------AGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 212
                               |     -   |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
                              -1        24                                                                                                                                                                                            


Chain F from PDB  Type:PROTEIN  Length:193
 aligned with Q9K189_NEIMB | Q9K189 from UniProtKB/TrEMBL  Length:232

    Alignment length:202
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228  
         Q9K189_NEIMB    29 ADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 230
               SCOP domains d3a3         tf_ F: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---------........eee............eeeeeee...hhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...eee...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a3t F  -4 DDDK---------AGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKA 212
                               |     -   |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  
                              -1        24
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3A3T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3A3T)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q9K189_NEIMB | Q9K189)
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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  Cis Peptide Bonds
    Thr A:176 - Pro A:177   [ RasMol ]  
    Thr B:176 - Pro B:177   [ RasMol ]  
    Thr C:176 - Pro C:177   [ RasMol ]  
    Thr D:176 - Pro D:177   [ RasMol ]  
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  3a3t
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9K189_NEIMB | Q9K189: 3dvw 3hz8

(-) Related Entries Specified in the PDB File

1dsb DSBA FROM E. COLI
2znm NMDSBA3 FROM N. MENINGITIDIS