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(-) Description

Title :  THE CRYSTAL STRUCTURE OF GEOTRICHUM SP. M128 XYLOGLUCANASE
 
Authors :  K. Yaoi, H. Kondo, A. Hiyoshi, N. Noro, H. Sugimoto, S. Tsuda, K. Miyazaki
Date :  16 Mar 09  (Deposition) - 08 Sep 09  (Release) - 08 Sep 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Propeller, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Yaoi, H. Kondo, A. Hiyoshi, N. Noro, H. Sugimoto, S. Tsuda, K. Miyazaki
The Crystal Structure Of A Xyloglucan-Specific Endo-Beta-1, 4-Glucanase From Geotrichum Sp. M128 Xyloglucanase Reveals A Key Amino Acid Residue For Substrate Specificity
Febs J. V. 276 5094 2009
PubMed-ID: 19682300  |  Reference-DOI: 10.1111/J.1742-4658.2009.07205.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - XYLOGLUCANASE
    Chains: A
    EC Number: 3.2.1.151
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET14-B
    Expression System Strain: BL21-CODONPLUS (DE3) RP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES IN UNP 21-776
    Gene: XEG
    Organism Scientific: GEOTRICHUM SP. M128
    Organism Taxid: 203496
    Synonym: XYLOGLUCAN-SPECIFIC ENDO-BETA-1,4-GLUCANASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3A0F)

(-) Sites  (0, 0)

(no "Site" information available for 3A0F)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:511 -A:530

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:261 -Pro A:262
2Tyr A:293 -Pro A:294
3Lys A:476 -Pro A:477

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3A0F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3A0F)

(-) Exons   (0, 0)

(no "Exon" information available for 3A0F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:753
 aligned with Q764N8_GEOS1 | Q764N8 from UniProtKB/TrEMBL  Length:776

    Alignment length:753
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772   
         Q764N8_GEOS1    23 AELKPVTISGGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGANTYPAPTGNKKVVPGGWNGISVGNGDTVVVSTLDANGEDSVYLSRDAGNSWKDLGKLTTPAGAGGNSQKESDAKLRNGTPLPWLSFQNRGSGIVGFGWWLAAILLDPFSDRLLYGTGAVIWATDAVSRADSNQAPSWYINTEGIEETAILVLKSPPAGPAHLFSGMYDLGGMRHDDFSVPQPMYSKPTFSSTDGLDFAGRAANVLARVGRNDHPDAGVAGCTQGAYTTNSGDSWTLFQTCVPSLEVGNGGTIAVGADGKTFVWSPSKADGKGPYTSSDYGKTWTAPSGLSKQTTGIAADRVQANTFYVYVEGDFFVSTDGGKSYTKKGNGLPCCWTYTGTPVTSNLRAGELWVSVKGVGIYHSTDFGNTFTALAGSGSSLNPAVFSIGAPQTPNATETLFLWGIPSASQPEGLYMSTDNGGLWTRLNDDAHNYGGATVISGDPRIYGRVYIGMNGRGIICAQALG 775
               SCOP domains d3a0fa1 A:3-422 automated matches                                                                                                                                                                                                                                                                                                                                                                                                   d3a0fa2 A:423-755 automated matches                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 3a0fA01  3a0fA02 A:12-436 Oligoxyloglucan reducing end-specific cellobiohydrolase; domain 2                                                                                                                                                                                                                                                                                                                                                       3a0fA01 A:3-11,A:437-755 Oligoxyloglucan reducing end-specific cellobiohydrolase; domain 2                                                                                                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee........eeeeee.......eeeee....eeeee....eeee...................eeeee........eeeee..........eeeee.......eeee.................eee.......eeee.....eeee.......ee.............eeeeee.......eeeee.....eeee.......ee........hhhhhhhhhhhh........eeeeeee.....eeeeee..........eeeeee......eee.........ee............eeeeeee.....eeeeee.......eeee......eeehhhhhh.......eee.hhh.......hhhhhh......eee.......eee......eeee....eeee.hhhhhhhh....eee.........eeeee.........eeee........................eeeeeeee..eeeeeeeeee.............eeee.......ee..............eeee......eeee.........eee...................eee.......eeeee..eeeee.......eee...........eeeee.......eeeee...eeeee.......ee........eeeeeeee.........eeeeeee.......eeeee.......ee............eeee......eeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a0f A   3 AELKPVTISGGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGANTYPAPTGNKKVVPGGWNGISVGNGDTVVVSTLDANGEDSVYLSRDAGNSWKDLGKLTTPAGAGGNSQKESDAKLRNGTPLPWLSFQNRGSGIVGFGWWLAAILLDPFSDRLLYGTGAVIWATDAVSRADSNQAPSWYINTEGIEETAILVLKSPPAGPAHLFSGMYDLGGMRHDDFSVPQPMYSKPTFSSTDGLDFAGRAANVLARVGRNDHPDAGVAGCTQGAYTTNSGDSWTLFQTCVPSLEVGNGGTIAVGADGKTFVWSPSKADGKGPYTSSDYGKTWTAPSGLSKQTTGIAADRVQANTFYVYVEGDFFVSTDGGKSYTKKGNGLPCCWTYTGTPVTSNLRAGELWVSVKGVGIYHSTDFGNTFTALAGSGSSLNPAVFSIGAPQTPNATETLFLWGIPSASQPEGLYMSTDNGGLWTRLNDDAHNYGGATVISGDPRIYGRVYIGMNGRGIICAQALG 755
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3A0F)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3A0F)

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  Cis Peptide Bonds
    Gly A:261 - Pro A:262   [ RasMol ]  
    Lys A:476 - Pro A:477   [ RasMol ]  
    Tyr A:293 - Pro A:294   [ RasMol ]  
 

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  3a0f
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 Related Entries

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