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(-) Description

Title :  E69 DELETION MUTANT SINGLE INSULIN-LIKE GROWTH FACTOR BINDING DOMAIN PROTEIN (SIBD-1) FROM CUPIENNIUS SALEI
 
Authors :  C. Widmer, U. Baumann
Date :  09 Aug 11  (Deposition) - 06 Jun 12  (Release) - 08 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Signaling, Igfbp, Single Insulin-Binding Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Trachsel, C. Widmer, U. Kampfer, C. Buhr, T. Baumann, L. Kuhn-Nentwig, S. Schurch, J. Schaller, U. Baumann
Structural And Biochemical Characterization Of Native And Recombinant Single Insulin-Like Growth Factor-Binding Domain Protein (Sibd-1) From The Central American Hunting Spider Cupiennius Salei (Ctenidae).
Proteins V. 80 2323 2012
PubMed-ID: 22622866  |  Reference-DOI: 10.1002/PROT.24119

(-) Compounds

Molecule 1 - SINGLE INSULIN-LIKE GROWTH FACTOR-BINDING DOMAIN PROTEIN-1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PCOLD-II
    Expression System Vector Type: PLASMID
    Fragment: INSULIN-LIKE GROWTH FACTOR BINDING DOMAIN RESIDUES 20-97
    Organism Scientific: CUPIENNIUS SALEI
    Organism Taxid: 6928
    Other Details: E69 DELETION MUTANT
    Synonym: E69 DELETION MUTANT, SIBD-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:4 , ASP A:24 , CYS A:28 , CYS A:29 , HOH A:2097 , TYR B:39 , PHE B:47BINDING SITE FOR RESIDUE ACT B1079
2AC2SOFTWARETYR A:39 , PHE A:47 , HOH A:2120 , ASP B:24 , CYS B:28 , CYS B:29BINDING SITE FOR RESIDUE ACT A1079

(-) SS Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1A:3 -A:26
2A:6 -A:28
3A:11 -A:29
4A:17 -A:32
5A:40 -A:56
6A:50 -A:74
7B:3 -B:26
8B:6 -B:28
9B:11 -B:29
10B:17 -B:32
11B:40 -B:56
12B:50 -B:74

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ZXC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZXC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZXC)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZXC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:71
 aligned with SIBD1_CUPSA | G4V4F9 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:78
                                    29        39        49        59        69        79        89        
           SIBD1_CUPSA   20 FTCPECRPELCGDPGYCEYGTTKDACDCCPVCFQGPGGYCGGPEDVFGICADGFACVPLVGERDSQDPEIVGTCVKIP 97
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhh.........eee......eee......eee.hhhh.......eeeee..------..-.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  3zxc A  1 FTCPECRPELCGDPGYCEYGTTKDACDCCPVCFQGPGGYCGGPEDVFGICADGFACVPLV------DP-IVGTCVKIP 78
                                    10        20        30        40        50        60      ||70        
                                                                                      60     67| |        
                                                                                              68 |        
                                                                                                70        


Chain B from PDB  Type:PROTEIN  Length:74
 aligned with SIBD1_CUPSA | G4V4F9 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:78
                                    29        39        49        59        69        79        89        
           SIBD1_CUPSA   20 FTCPECRPELCGDPGYCEYGTTKDACDCCPVCFQGPGGYCGGPEDVFGICADGFACVPLVGERDSQDPEIVGTCVKIP 97
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhh.........eee......eee......eee.hhhh.......eeeee......---.-.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  3zxc B  1 FTCPECRPELCGDPGYCEYGTTKDACDCCPVCFQGPGGYCGGPEDVFGICADGFACVPLVGERD---P-IVGTCVKIP 78
                                    10        20        30        40        50        60   |   |70        
                                                                                          64  68 |        
                                                                                                70
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZXC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZXC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZXC)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (SIBD1_CUPSA | G4V4F9)
molecular function
    GO:0005520    insulin-like growth factor binding    Interacting selectively and non-covalently with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it.
biological process
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0001558    regulation of cell growth    Any process that modulates the frequency, rate, extent or direction of cell growth.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SIBD1_CUPSA | G4V4F9: 3zxb

(-) Related Entries Specified in the PDB File

3zxb WILD TYPE SINGLE INSULIN-LIKE GROWTH FACTOR BINDING DOMAIN PROTEIN (SIBD-1) FROM CUPIENNIUS SALEI