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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CRISPR-CAS RNA SILENCING CMR COMPLEX BOUND TO A TARGET ANALOG
 
Authors :  T. Osawa, T. Numata
Date :  20 Nov 14  (Deposition) - 13 May 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Rna-Recognition Motif, Rna Silencing, Rna Binding, Rna Binding Protein-Rna-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Osawa, H. Inanaga, C. Sato, T. Numata
Crystal Structure Of The Crispr-Cas Rna Silencing Cmr Complex Bound To A Target Analog
Mol. Cell 2015
PubMed-ID: 25921071  |  Reference-DOI: 10.1016/J.MOLCEL.2015.03.018

(-) Compounds

Molecule 1 - CRISPR SYSTEM CMR SUBUNIT CMR2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CMR2, PF1129
    Organism Scientific: PYROCOCCUS FURIOSUS DSM 3638
    Organism Taxid: 186497
    Synonym: CRISPR-ASSOCIATED PROTEIN CAS10/CMR2, SUBTYPE III-B
 
Molecule 2 - CRISPR SYSTEM CMR SUBUNIT CMR3
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CMR3, PF1128
    Organism Scientific: PYROCOCCUS FURIOSUS DSM 3638
    Organism Taxid: 186497
    Synonym: CRISPR TYPE III-B/RAMP MODULE-ASSOCIATED PROTEIN CMR3
 
Molecule 3 - CMR4
    Chains: C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AF_1863
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS DSM 4304
    Organism Taxid: 224325
 
Molecule 4 - CRISPR SYSTEM CMR SUBUNIT CMR5
    Chains: F, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AF_1861
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS DSM 4304
    Organism Taxid: 224325
    Synonym: CRISPR TYPE III-B/RAMP MODULE-ASSOCIATED PROTEIN CMR5
 
Molecule 5 - CMR6
    Chains: H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AF_1861
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS DSM 4304
    Organism Taxid: 224325
 
Molecule 6 - RNA (32-MER)
    Chains: I
    Engineered: YES
    Organism Scientific: PYROCOCCUS FURIOSUS COM1
    Organism Taxid: 1185654
    Synthetic: YES
 
Molecule 7 - DNA (5'- D(*TP*GP*CP*TP*CP*TP*CP*AP*GP*CP*CP*GP*CP*AP*AP*GP*GP*AP*CP*CP*GP*CP* AP*TP*AP*CP*TP*AP*CP*AP*A)-3')
    Chains: J
    Engineered: YES
    Organism Scientific: SYNTHETIC
    Organism Taxid: 32630
    Other Details: THIS SEQUENCE IS COMPLEMENTARY TO ENTITY 6
    Other Details - Source: THIS SEQUENCE IS COMPLEMENTARY TO ENTITY_ID 6
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:448 , CYS A:451 , CYS A:478 , CYS A:481BINDING SITE FOR RESIDUE ZN A 901
2AC2SOFTWAREGLU B:200 , HOH B:522 , A I:6 , HOH I:121 , HOH I:122 , HOH I:123BINDING SITE FOR RESIDUE MG B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3X1L)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Val A:227 -Pro A:228
2Tyr A:271 -Pro A:272
3Ile H:217 -Gly H:218

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X1L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3X1L)

(-) Exons   (0, 0)

(no "Exon" information available for 3X1L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:573
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhh.....hhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.eeeeeeee...eeehhhhhhhhh...eee...hhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh....eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhh...eeeee....eeeeee..hhhhhhhhhhhhhhhhh.eeeeeeeee...hhhhhhhhhhhhhhhhhhhh....eeeeeee.....eeeeeeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1l A 218 DPTLLRIKIVPVQPFIANSRKQLDLWASSHLLSMLMYKALEVIVDKFGPEHVIYPSLRDQPFFLKFYLGENIGDEILVANLPNKALAIVSGKEAEKIEEEIKKRIRDFLLQLYREAVDWAVENGVVKVDRSEKDSMLKEAYLKIVREYFTVSITWVSLSEKEDIYQVTENAGLSRVLERIAIYPLLVKILDSLGERKVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIKRYYPVWIRSKTGQKIRFESVVDVALLYKNWRKIFDEKYGKDLVSKAREVSEDFVKDNMLVDSDLYYSSTWESEEKVKEVVDFLNAAYKEIGNPPKYYAILVMDGDTPQVHVAISQALANFSIREVRSVVKDEGLLIYAGGDDVLAILPVDKALEVAYKIRKEFGKSFKLSAGILIVHYKHPLYDALEKARDLLNNKAKNVPGKDTLAIGLLKRSGSYYISLVGWELIRVFYNSELRKKLLEGKRFIYHVLREVDTWPKVGIDEMLKFEVIRHIRNKEETKELREKIYGEIKDLLEHVRGNNEVEKVRGLFTFLKIITDAEVFP 871
                                   227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387  ||   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554 ||    577       587       597    || 642       652       662       672       682       692      |711       721       731       741       751       761       771       781||     796       806       816   ||  828       838       848       858       868   
                                                                                                                                                                                                      390|                                                                                                                                                 556|                             602|                                                          699|                                                                      782|                             820|                                                
                                                                                                                                                                                                       408                                                                                                                                                  570                              638                                                           709                                                                       788                              823                                                


Chain B from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..................eee....hhhhhhhhhhhhhhhhhhhhhhh........eeeeeeee..eee....eeee..eeee...eee..eee..........eeehhhhhhhhh....eee.hhh...eeeeeeeeee......eeeeeeeeeeeee..eeeeeee....hhhhhhhhh.eee......eeeeeeee..hhhhhh...eeeeeeeee...ee.hhhhhhhhhhhhh...eeeeeee....eee..ee....ee...eeee....eeeeeeeeeee...eee...hhhhh..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1l B   1 MIEVTFTPYDVLLFRESRPFDAGSESVARSIIPLPQTVAGAIRTLLFYKGLKNCVGVGEEEPEFTLVGIAIGTRIYPLPFNIIKSEKFYKVVNPGRFLGKLILPPKGKYKSGYVTESILEKYLKGELKEVEENKVIRIEKEKRIGIKLSREKKVVEEGMLYTVEFLRIEKIYAWIEDPGCGIKDILSSYEFLTLGGESRVAFVEVDDKTPDIFNRELGSTKKALFYFSTPTIGKVGEIVQELEKRLNAKIDDYLLVSSRPTAISGWDMHEKKPKGTKFAIPPGSVLFVEFKEEVEVPPYIKLGKLKKLGYGLALGGIWE 322
                                    10        20        30        40        50        60        70  ||    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313         
                                                                                                   73|                                                                                                                                                                                                                                                     
                                                                                                    77                                                                                                                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee............................eehhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhh.hhhhhhhh...eee..eeeeeeeee.....eeeeehhhhhhhhhhhhhhhh......eeee.hhhh.....eeee..eeeee....hhhhhhhhhhhhhhh......hhhhhhh.eeeehhhhhhhhhhhh.eeeeeeee......eeeeeeeeeee.....eeeeeeee........hhhhhhhhhhhhhhhhhhh..eee...hhhhh..eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1l C   7 KAVVFGLYSITPVHAGSGAELSVIDLPIQRERHTGFPVIWGQSLKGVLRSRFRQLELDEKIEVSQKWKWKEKTKEVLKEKADEFIKKVEERKRDPLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVIQRLKEDFELVSVELSNNETIAGNALILNGENKVILEDIVLKVKSDSNVIENLVEVLKTLFGDNFFGKPIESIKERIAIVSDDVFKSFTRFSTEIVARVRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKENLPKEVDNTQKIVNVLKVTFNNAFLQIGGDETVGKGFVKVRA 345
                                    16        26        36        46        56        66  ||    77        87        97       107       117       127       137       147       157    || 183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343  
                                                                                         69|                                                                                        162|                                                                                                                                                                      
                                                                                          71                                                                                         179                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee............................eehhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhh.hhhhh......eee..eeeeeeeee.....eeeeehhhhhhhhhhhhhhhhhhh.............eeee.hhhh.....eeee..eeeee...hhhhhhhhhhhh.......hhh.eeeehhhhhhhhhhhh.eeeeeeee......eeeeeeeeeee.....eeeeeeee......hhhhhhhhhhhhhhhhhhh..eee...hhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1l D   1 MFDMFEKAVVFGLYSITPVHAGSGAELSVIDLPIQRERHTGFPVIWGQSLKGVLRSRFRQLELDEKIEVEQKWKWKEKTKEVLKEKADEFIKKVEERKRDPLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVIQRLKEDFELVSEIENDIELKKVELSNNETIAGNALILNGENKVILEDIVLKVKSVIENLVEVLKTLFGDNFFGKIKERIAIVSDDVFKSFTRFSTEIVARVRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKLPKEVDNTQKIVNVLKVTFNNAFLQIGGDETVGKGFVKVRAGV 347
                                    10        20        30        40        50        60        70|       81        91       101       111       121       131       141       151       161       171|      187       197       207   ||  220       230   ||  244       254       264       274       284       294       306       316       326       336       346 
                                                                                                70|                                                                                                171|                              211|                234|                                                            302|                                          
                                                                                                 72                                                                                                 178                               215                 239                                                             305                                          


Chain E from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeee............................eehhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhh..hhhhh......eee..eeeeeeeee.....eeeeehhhhhhhhhhhhhhhhhhhh......eeee..........eeee..eeeee....hhhhhhhhhhhhhhh......hhhhhhh.eeeehhhhhhhhhhhh.eeeeeeeee....eeeeeeeeeeee.....eeeeeeee...........hhhhhhhhhhhhhh..eee...hhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3x1l E   3 DMFEKAVVFGLYSITPVHAGSGAELSVIDLPIQRERHTGFPVIWGQSLKGVLRSRFRQLELDEKIEVSQKWKWKEKTKEVLKEKADEFIKKVEERKRDPLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVIQRLKEDFELVSEIENVELSNNETIAGNALILNGENKVILEDIVLKVKSDSNVIENLVEVLKTLFGDNFFGKPIESIKERIAIVSDDVFKSFTRFSTEIVARVRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKLPKEVDNTQKIVNVLKVTFNNAFLQIGGDETVGKGFVKVRAGV 347
                                    12        22        32        42        52        62      ||73        83        93       103       113       123       133       143       153       163  ||   185       195       205       215       225       235       245       255       265       275       285       295      |307       317       327       337       347
                                                                                             69|                                                                                            166|                                                                                                                        302|                                          
                                                                                              71                                                                                             179                                                                                                                         305                                          


Chain F from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1l F   3 IREIEQERASFAFKVVSDIKDKYSQNKKVQGKYSSYAEKAPTIILNNGLGATLAFFLSKLIDDVDYKSINPESFGNAENIAYAFLYKHLSTWLAEGNGKDSAFSGLTNGEDPLKYIMEKTAIDVAISTEEALSILNWIKKFAKAML 151
                                    12        22        32        42        52        62|       75        85        95       105       115       125       135       145      
                                                                                      62|                                                                                     
                                                                                       66                                                                                     


Chain G from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..............hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1l G   2 DIREIEQERASFAFKVVSDIKDKYSQNKKVQGKYSSYAEKAPTIILNNGLGATLAFFLSKLEKPIDDVDYKSINPESFGNAENIAYAFLYKHLSTWLAEGNGKDSAFSGLTNGEDPLKYIMEKTAIDVAISTEEALSILNWIKKFAKAMLEE 153
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151  


Chain H from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhhhhhh......hhhhhhhh...eeeee..eee.hhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee.............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......eee....eeehhhhhhhhh.......eee...eehhhhhhhh...eee....eee.....eeeeeeee.....hhhhhhhhhhhhhhhh....hhhhh...ee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1l H   5 VVVKYPVNSELANYAEKFWKKELAIYNLSLILNKMTPFVKRRSESYKSSLSAVKEIFKNVDDFQNFLNSVLRRSLDEYRVFFENYERLFNSFSSKIFSMRTKSRLVVGLGDESVYETSIRLHRNYGVPYIPGSALKGVAKHYAFSILARENGDEILRIYESVKEDLKEDYYLTAAVIQELFEKKFDELGAIRNTRVEIGDTVISVGDIVKIFGTQKEEGSVIFFDAFPTPEQLKDKPNLELDIMIFFLTVPAGVEFTFAVASRDLDDLAEKAEKLLKEALKKFGVGAKTSLGYGRFD 338
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164      |189       199       209       219       229       239       249       259   ||  291       301       311       321       331       
                                                                                                                                                                                                171|                                                                         263|                                                    
                                                                                                                                                                                                 187                                                                          286                                                    


Chain I from PDB  Type:RNA  Length:32
                                                                
                 3x1l I   1 AUUGAAAGUUGUAGUAUGCGGUCCUUGCGGCU  32
                                    10        20        30  


Chain J from PDB  Type:DNA  Length:22
                                                      
                 3x1l J  10 CCGCAAGGACCGCATACTACAA  31
                                    19        29
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X1L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X1L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X1L)

(-) Gene Ontology  (6, 11)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CMR2_PYRFU | Q8U1S6: 3ung 3ur3 3w2v 3w2w 4doz 4h4k 4w8y
        CMR3_PYRFU | Q8U1S7: 3w2v 3w2w 4h4k
        CMR5_ARCFU | O28417: 2oeb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3X1L)