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(-) Description

Title :  STRUCTURE BASIS OF INACTIVATING CELL ABSCISSION WITH CHIMERA PEPTIDE 1
 
Authors :  H. J. Kim, A. Matsuura, H. H. Lee
Date :  05 May 14  (Deposition) - 15 Jul 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,L  (1x)
Biol. Unit 4:  I,J,K  (1x)
Keywords :  Coiled-Coil, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Kim, J. Yoon, A. Matsuura, J. H. Na, W. K. Lee, H. Kim, J. W. Choi, J. E. Park, S. J. Park, K. T. Kim, R. Chang, B. I. Lee, Y. G. Yu, Y. K. Shin, C. Jeong, K. Rhee, H. H. Lee
Structural And Biochemical Insights Into The Role Of Testis-Expressed Gene 14 (Tex14) In Forming The Stable Intercellular Bridges Of Germ Cells
Proc. Natl. Acad. Sci. Usa 2015
PubMed-ID: 26392564  |  Reference-DOI: 10.1073/PNAS.1418606112

(-) Compounds

Molecule 1 - CENTROSOMAL PROTEIN OF 55 KDA
    Chains: A, B, D, E, G, H, J, K
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGST2
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 160-217
    Gene: CEP55
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CEP55, UP-REGULATED IN COLON CANCER 6
 
Molecule 2 - TEX-14
    Chains: C, F, I, L
    Engineered: YES
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SYNTHETIC PEPTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GH   L
Biological Unit 4 (1x):         IJK 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3WUU)

(-) Sites  (0, 0)

(no "Site" information available for 3WUU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WUU)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Tyr C:801 -Pro C:802
2Glu E:210 -Thr E:211
3Tyr F:801 -Pro F:802
4Thr G:209 -Glu G:210
5Lys H:208 -Thr H:209
6Tyr I:801 -Pro I:802
7Tyr L:801 -Pro L:802

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WUU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WUU)

(-) Exons   (0, 0)

(no "Exon" information available for 3WUU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:54
                                                                                      
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 3wuu A 156 AMGSFNSSINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKT 209
                                   165       175       185       195       205    


Chain B from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 3wuu B 159 SFNSSINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKK 208
                                   168       178       188       198       208


Chain C from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .............. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 3wuu C 791 DLAVGPPSLNYPGY 804
                                   800    


Chain D from PDB  Type:PROTEIN  Length:44
                                                                            
               SCOP domains -------------------------------------------- SCOP domains
               CATH domains -------------------------------------------- CATH domains
               Pfam domains -------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------- PROSITE
                 Transcript -------------------------------------------- Transcript
                 3wuu D 168 HEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKTET 211
                                   177       187       197       207    


Chain E from PDB  Type:PROTEIN  Length:44
                                                                            
               SCOP domains -------------------------------------------- SCOP domains
               CATH domains -------------------------------------------- CATH domains
               Pfam domains -------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------- PROSITE
                 Transcript -------------------------------------------- Transcript
                 3wuu E 168 HEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKTET 211
                                   177       187       197       207    


Chain F from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ............. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 3wuu F 792 LAVGPPSLNYPGY 804
                                   801   


Chain G from PDB  Type:PROTEIN  Length:46
                                                                              
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 3wuu G 165 NNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKTE 210
                                   174       184       194       204      


Chain H from PDB  Type:PROTEIN  Length:48
                                                                                
               SCOP domains ------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                 3wuu H 162 SSINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKT 209
                                   171       181       191       201        


Chain I from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .............. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 3wuu I 791 DLAVGPPSLNYPGY 804
                                   800    


Chain J from PDB  Type:PROTEIN  Length:55
                                                                                       
               SCOP domains ------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                 3wuu J 156 AMGSFNSSINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKTE 210
                                   165       175       185       195       205     


Chain K from PDB  Type:PROTEIN  Length:51
                                                                                   
               SCOP domains --------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------- Transcript
                 3wuu K 159 SFNSSINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKT 209
                                   168       178       188       198       208 


Chain L from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .............. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 3wuu L 791 DLAVGPPSLNYPGY 804
                                   800
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WUU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WUU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WUU)

(-) Gene Ontology  (35, 41)

Asymmetric Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Glu E:210 - Thr E:211   [ RasMol ]  
    Lys H:208 - Thr H:209   [ RasMol ]  
    Thr G:209 - Glu G:210   [ RasMol ]  
    Tyr C:801 - Pro C:802   [ RasMol ]  
    Tyr F:801 - Pro F:802   [ RasMol ]  
    Tyr I:801 - Pro I:802   [ RasMol ]  
    Tyr L:801 - Pro L:802   [ RasMol ]  
 
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  3wuu
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  CEP55_HUMAN | Q53EZ4
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  TEX14_HUMAN | Q8IWB6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CEP55_HUMAN | Q53EZ4: 3e1r 3wut 3wuv
        TEX14_HUMAN | Q8IWB6: 3wut

(-) Related Entries Specified in the PDB File

3wut 3wuv