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(-) Description

Title :  CRYSTAL STRUCTURE OF P450CAM
 
Authors :  A. Kishimoto, K. Takagi, A. Amano, K. Sakurai, T. Mizushima, H. Shimada
Date :  25 Feb 14  (Deposition) - 18 Mar 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym. Unit :  A,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  D  (1x)
Keywords :  Oxidoreductase, Metal-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kishimoto, K. Takagi, A. Amano, K. Sakurai, Y. Katayama, R. Aminaka M. Ito, T. Mizushima, H. Shimada
Structure Of P450Cam Intermedite
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CAMPHOR 5-MONOOXYGENASE
    Chains: A, D
    EC Number: 1.14.15.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUC18
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CAMC, CYP101
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303
    Synonym: CYTOCHROME P450-CAM, CYTOCHROME P450CAM

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AD
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CAM2Ligand/IonCAMPHOR
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CAM1Ligand/IonCAMPHOR
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1CAM1Ligand/IonCAMPHOR
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:112 , LEU A:244 , LEU A:245 , GLY A:248 , GLY A:249 , THR A:252 , LEU A:294 , ASP A:297 , ARG A:299 , GLN A:322 , THR A:349 , PHE A:350 , GLY A:351 , HIS A:355 , CYS A:357 , GLY A:359 , CAM A:502 , HOH A:623 , HOH A:655BINDING SITE FOR RESIDUE HEM A 501
2AC2SOFTWAREPHE A:87 , GLY A:248 , HEM A:501BINDING SITE FOR RESIDUE CAM A 502
3AC3SOFTWAREARG D:112 , LEU D:244 , LEU D:245 , GLY D:248 , GLY D:249 , THR D:252 , ASP D:297 , ARG D:299 , GLN D:322 , THR D:349 , PHE D:350 , GLY D:351 , HIS D:355 , CYS D:357 , GLY D:359 , CAM D:502 , HOH D:616 , HOH D:632BINDING SITE FOR RESIDUE HEM D 501
4AC4SOFTWAREPHE D:87 , GLY D:248 , HEM D:501BINDING SITE FOR RESIDUE CAM D 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WRK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ile A:88 -Pro A:89
2Ile D:88 -Pro D:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WRK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WRK)

(-) Exons   (0, 0)

(no "Exon" information available for 3WRK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhh.........hhhhhhhhhhhhhhh.....eeeehhhhheeee.hhhhhhhhhhh...ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeehhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh.ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....eeeee...eee..eee....eeeehhhhhhhh.......................hhhhh..hhhhhhhhhhhhhhhhhh.....ee.......ee.....ee...eee.hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wrk A  10 NLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPREQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPATTKAVHH 416
                                    19        29        39        49        59        69        79        89||     115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415 
                                                                                                           90|                                                                                                                                                                                                                                                                                                                     
                                                                                                           107                                                                                                                                                                                                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:392
                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhh.........hhhhhhhhhhhhhhh.....eeeehhhhheeee.hhhhhhhhhhh...ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeehhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh.ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....eeeee...eee..eee....eeeehhhhhhhh.......................hhhhh..hhhhhhhhhhhhhhhhhh.....ee.......ee.....ee...eee.hhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wrk D  10 NLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPRPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPATTKAVHH 416
                                    19        29        39        49        59        69        79        89||     114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414  
                                                                                                           90|                                                                                                                                                                                                                                                                                                                      
                                                                                                           106
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WRK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WRK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WRK)

(-) Gene Ontology  (10, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CPXA_PSEPU | P00183: 1akd 1c8j 1cp4 1dz4 1dz6 1dz8 1dz9 1geb 1gek 1gem 1gjm 1iwi 1iwj 1iwk 1j51 1k2o 1lwl 1mpw 1noo 1o76 1p2y 1p7r 1pha 1phb 1phc 1phd 1phe 1phf 1phg 1qmq 1re9 1rf9 1t85 1t86 1t87 1t88 1uyu 1yrc 1yrd 2a1m 2a1n 2a1o 2cp4 2cpp 2fe6 2fer 2feu 2frz 2gqx 2gr6 2h7q 2h7r 2h7s 2l8m 2lqd 2m56 2qbl 2qbm 2qbn 2qbo 2z97 2zaw 2zax 2zuh 2zui 2zuj 2zwt 2zwu 3cp4 3cpp 3fwf 3fwg 3fwi 3fwj 3l61 3l62 3l63 3oia 3ol5 3p6m 3p6n 3p6o 3p6p 3p6q 3p6r 3p6s 3p6t 3p6u 3p6v 3p6w 3p6x 3w9c 3wrh 3wri 3wrj 3wrl 3wrm 4cp4 4cpp 4ek1 4g3r 4jws 4jwu 4jx1 4kky 4l49 4l4a 4l4b 4l4c 4l4d 4l4e 4l4f 4l4g 5cp4 5cpp 5gxg 5ik1 6cp4 6cpp 7cpp 8cpp

(-) Related Entries Specified in the PDB File

3wrh 3wri 3wrj 3wrl 3wrm