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(-) Description

Title :  CRYSTAL STRUCTURE OF BARLEY BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1 IN COMPLEX WITH PEG400
 
Authors :  V. A. Streltsov, M. Hrmova
Date :  12 Nov 13  (Deposition) - 25 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Barrel, Hydrolase, Grain Development, Tim Barrel/Beta Sheet, N- Glycosylation, Plant Apoplast (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. A. Streltsov, S. Luang, J. R. Ketudat-Cairns, M. Raab, I. Tvaroska, S. Fort, J. Jimenez-Barbero, A. Peisley, J. N. Varghese, M. Hrmova
A Landscape Of The Product And Substrate Trajectories In A Glycoside Hydrolase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-D-GLUCAN EXOHYDROLASE ISOENZYME EXOI
    Chains: A
    EC Number: 3.2.1.-
    Fragment: UNP RESIDUES 26-630
    Organism Common: BARLEY,TWO-ROWED BARLEY
    Organism Scientific: HORDEUM VULGARE SUBSP. VULGARE
    Organism Taxid: 112509

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 23)

Asymmetric/Biological Unit (9, 23)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3FUC2Ligand/IonALPHA-L-FUCOSE
4MAN1Ligand/IonALPHA-D-MANNOSE
5NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
7PG42Ligand/IonTETRAETHYLENE GLYCOL
8PGE2Ligand/IonTRIETHYLENE GLYCOL
9XYP2Ligand/IonBETA-D-XYLOPYRANOSE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:36 , GLY A:57 , TRP A:286 , THR A:399 , TRP A:434 , HOH A:805 , HOH A:809 , HOH A:973BINDING SITE FOR RESIDUE PGE A 716
02AC2SOFTWAREGLU A:13 , LYS A:279 , HOH A:1193 , HOH A:1614BINDING SITE FOR RESIDUE PGE A 717
03AC3SOFTWARELYS A:277 , LYS A:279 , HOH A:937 , HOH A:1614 , HOH A:1615BINDING SITE FOR RESIDUE EDO A 718
04AC4SOFTWAREGLU A:433 , TRP A:434 , GLN A:435 , HOH A:1089 , HOH A:1237 , HOH A:1280 , HOH A:1410BINDING SITE FOR RESIDUE EDO A 719
05AC5SOFTWAREGLU A:220 , ARG A:291 , HOH A:1303 , HOH A:1442BINDING SITE FOR RESIDUE PEG A 720
06AC6SOFTWARELYS A:412 , PHE A:471 , GLY A:475 , HOH A:1616 , HOH A:1617BINDING SITE FOR RESIDUE PEG A 721
07AC7SOFTWARETYR A:2 , LEU A:4 , LYS A:10 , PRO A:11 , ASP A:14 , HOH A:1585BINDING SITE FOR RESIDUE PG4 A 722
08AC8SOFTWAREARG A:22 , MET A:23 , THR A:24 , THR A:445 , GLU A:449 , HOH A:922 , HOH A:939 , HOH A:1249 , HOH A:1601BINDING SITE FOR RESIDUE PG4 A 723
09AC9SOFTWAREGLU A:220 , ASN A:221 , THR A:294 , HOH A:966 , HOH A:1203 , HOH A:1285 , HOH A:1425 , HOH A:1527 , HOH A:1587 , HOH A:1631 , HOH A:1668 , HOH A:1681BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 221 RESIDUES 701 TO 703
10BC1SOFTWARETYR A:425 , HIS A:487 , LYS A:493 , ASN A:496 , ASN A:498 , PRO A:502 , GLU A:503 , HOH A:951 , HOH A:1094 , HOH A:1104 , HOH A:1111 , HOH A:1171 , HOH A:1196 , HOH A:1294 , HOH A:1320 , HOH A:1363 , HOH A:1394 , HOH A:1471 , HOH A:1512 , HOH A:1546 , HOH A:1605 , HOH A:1624 , HOH A:1626 , HOH A:1656 , HOH A:1672BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 498 RESIDUES 704 TO 710
11BC2SOFTWARETHR A:118 , ARG A:119 , ARG A:566 , ASN A:600 , HOH A:904 , HOH A:989 , HOH A:1029 , HOH A:1098 , HOH A:1272 , HOH A:1341 , HOH A:1602 , HOH A:1622 , HOH A:1627BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 600 RESIDUES 711 TO 715

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:151 -A:159
2A:513 -A:518

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ala A:145 -Pro A:146
2Lys A:206 -His A:207
3Phe A:208 -Val A:209
4Thr A:294 -Pro A:295
5Val A:317 -Pro A:318
6Leu A:404 -Pro A:405
7Glu A:503 -Pro A:504
8Leu A:578 -Pro A:579

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WLL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WLL)

(-) Exons   (0, 0)

(no "Exon" information available for 3WLL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:602
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhh..hhhhhhhhheeee.hhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhh.......eeee................hhhhhhhh.hhhhhhhhhhhhhhhhhhh...ee..............hhhhh...hhhhhhhhhhhhhhhhh.....................eeeee.hhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhh...eeee...ee..ee...hhhhhh...........eee.....hhhhh.....hhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh........hhhhhhhh.hhhhhhhhhhhhhhhheeeee.................eeeee.....hhhhhhh.................hhhhhhhhhh....eeeee...hhhhhhh.....eeeeee....hhhhhh.........hhhhhhhhhhhh.eeeeee......hhhhhhhh.eeeeee.....hhhhhhhhh...............hhhhh........................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wll A   1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTTNAT 602
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WLL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WLL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WLL)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:145 - Pro A:146   [ RasMol ]  
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    Leu A:578 - Pro A:579   [ RasMol ]  
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  3wll
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  Q9XEI3_HORVV | Q9XEI3
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  3.2.1.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9XEI3_HORVV | Q9XEI3: 1ex1 1ieq 1iev 1iew 1iex 1j8v 1lq2 1x38 1x39 3wlh 3wli 3wlj 3wlk 3wlm 3wln 3wlo 3wlp 3wlq 3wlr 3wls 3wlt

(-) Related Entries Specified in the PDB File

1ex1 1ieq 1iev 1iew 1iex 1j8v 3wlh 3wli 3wlj 3wlk 3wlm 3wln 3wlo 3wlp 3wlq 3wlr 3wls 3wlt