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(-) Description

Title :  STRUCTURAL ANALYSIS OF A BETA-GLUCOSIDASE MUTANT DERIVED FROM A HYPERTHERMOPHILIC TETRAMERIC STRUCTURE
 
Authors :  M. Nakabayashi, M. Kataoka, K. Ishikawa
Date :  19 Jun 13  (Deposition) - 12 Mar 14  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  P,Q,R,S
Biol. Unit 1:  P,Q  (1x)
Biol. Unit 2:  R,S  (1x)
Keywords :  Tim Barrel, Hydrolase, Sugar Binding, Hydrolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Nakabayashi, M. Kataoka, Y. Mishima, Y. Maeno, K. Ishikawa
Structural Analysis Of Beta-Glucosidase Mutants Derived Fro A Hyperthermophilic Tetrameric Structure
Acta Crystallogr. , Sect. D V. 70 877 2014
PubMed: search  |  Reference-DOI: 10.1107/S1399004713032276

(-) Compounds

Molecule 1 - BETA-GLUCOSIDASE
    Chains: P, Q, R, S
    EC Number: 3.2.1.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CELB
    Mutation: YES
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : PQRS
Biological Unit 1 (1x): PQ  
Biological Unit 2 (1x):   RS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 23)

Asymmetric Unit (2, 23)
No.NameCountTypeFull Name
1GOL11Ligand/IonGLYCEROL
2PO412Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2PO48Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2PO44Ligand/IonPHOSPHATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN P:17 , HIS P:150 , ASN P:206 , GLU P:207 , GLU P:372 , TRP P:410 , GLU P:417 , TRP P:418 , GOL P:503 , GOL P:504BINDING SITE FOR RESIDUE GOL P 501
02AC2SOFTWARETHR P:143 , MET P:201 , HOH P:928 , HOH P:978BINDING SITE FOR RESIDUE GOL P 502
03AC3SOFTWAREPHE P:344 , GLU P:417 , GOL P:501 , GOL P:504 , HOH P:622 , HOH P:903BINDING SITE FOR RESIDUE GOL P 503
04AC4SOFTWAREGLU P:207 , ALA P:264 , TYR P:307 , GOL P:501 , GOL P:503 , HOH P:714BINDING SITE FOR RESIDUE GOL P 504
05AC5SOFTWAREPHE P:422 , ARG P:425 , HOH P:803 , HOH P:936 , HOH P:1013 , PHE Q:468BINDING SITE FOR RESIDUE PO4 P 505
06AC6SOFTWAREPHE P:91 , LYS P:179 , GLU P:183 , LYS P:186 , HOH P:687 , HOH P:1021BINDING SITE FOR RESIDUE PO4 P 506
07AC7SOFTWAREASN P:213 , LYS P:237 , HOH P:621 , HOH P:676 , HOH P:844 , HOH P:845BINDING SITE FOR RESIDUE PO4 P 507
08AC8SOFTWAREILE P:106 , LYS P:298 , HOH P:619 , HOH P:734 , HOH P:736BINDING SITE FOR RESIDUE PO4 P 508
09AC9SOFTWAREGLN Q:17 , HIS Q:150 , ASN Q:206 , GLU Q:207 , GLU Q:372 , TRP Q:410 , GLU Q:417 , TRP Q:418 , GOL Q:502 , GOL Q:503BINDING SITE FOR RESIDUE GOL Q 501
10BC1SOFTWAREPHE Q:344 , GLU Q:417 , GOL Q:501 , GOL Q:503 , HOH Q:626BINDING SITE FOR RESIDUE GOL Q 502
11BC2SOFTWAREGLU Q:207 , VAL Q:210 , ALA Q:264 , TYR Q:307 , GOL Q:501 , GOL Q:502 , HOH Q:712BINDING SITE FOR RESIDUE GOL Q 503
12BC3SOFTWAREASP Q:37 , GLU Q:39 , ILE Q:161 , LYS Q:165 , HOH Q:786BINDING SITE FOR RESIDUE PO4 Q 504
13BC4SOFTWAREPHE P:468 , PHE Q:422 , ARG Q:425 , HOH Q:797 , HOH Q:798 , HOH Q:1014BINDING SITE FOR RESIDUE PO4 Q 505
14BC5SOFTWAREPHE Q:91 , LYS Q:94 , LYS Q:179 , GLU Q:183 , LYS Q:186 , HOH Q:706 , HOH Q:980BINDING SITE FOR RESIDUE PO4 Q 506
15BC6SOFTWAREASN Q:213 , LYS Q:237 , HOH Q:612 , HOH Q:676 , HOH Q:869 , HOH Q:892BINDING SITE FOR RESIDUE PO4 Q 507
16BC7SOFTWAREGLN R:17 , HIS R:150 , ASN R:206 , GLU R:207 , GLU R:372 , TRP R:410 , GLU R:417 , TRP R:418 , GOL R:503BINDING SITE FOR RESIDUE GOL R 501
17BC8SOFTWAREGLU Q:128 , ARG Q:131 , ARG R:131 , LYS R:132 , SER R:135 , HOH R:665 , HOH R:874BINDING SITE FOR RESIDUE GOL R 502
18BC9SOFTWAREGLU R:207 , VAL R:210 , TYR R:307 , GOL R:501 , HOH R:869BINDING SITE FOR RESIDUE GOL R 503
19CC1SOFTWAREPHE R:91 , LYS R:94 , LYS R:179 , VAL R:182 , GLU R:183 , LYS R:186 , HOH R:685 , HOH R:790BINDING SITE FOR RESIDUE PO4 R 504
20CC2SOFTWARETYR R:212 , ASN R:213 , GLU R:234 , LYS R:237 , HOH R:656 , HOH R:892BINDING SITE FOR RESIDUE PO4 R 505
21CC3SOFTWAREASP R:269 , PRO R:270 , ARG R:309 , HOH R:831BINDING SITE FOR RESIDUE PO4 R 506
22CC4SOFTWAREGLN S:17 , HIS S:150 , ASN S:206 , GLU S:207 , GLU S:372 , TRP S:410 , GLU S:417 , TRP S:418BINDING SITE FOR RESIDUE GOL S 501
23CC5SOFTWAREPHE S:91 , LYS S:179 , VAL S:182 , GLU S:183 , LYS S:186 , HOH S:710 , HOH S:829BINDING SITE FOR RESIDUE PO4 S 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WDP)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Pro P:224 -Pro P:225
2Trp P:410 -Ser P:411
3Pro Q:224 -Pro Q:225
4Trp Q:410 -Ser Q:411
5Pro R:224 -Pro R:225
6Trp R:410 -Ser R:411
7Pro S:224 -Pro S:225
8Trp S:410 -Ser S:411

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WDP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WDP)

(-) Exons   (0, 0)

(no "Exon" information available for 3WDP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain P from PDB  Type:PROTEIN  Length:472
 aligned with Q51723_9EURY | Q51723 from UniProtKB/TrEMBL  Length:472

    Alignment length:472
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  
         Q51723_9EURY     1 MKFPKNFMFGYSWSGFQFEMGLPGSEVESDWWVWVHDKENIASGLVSGDLPENGPAYWHLYKQDHDIAEKLGMDCIRGGIEWARIFPKPTFDVKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYRKIYSDWKERGKTFILNLYHWPLPLWIHDPIAVRKLGPDRAPAGWLDEKTVVEFVKFAAFVAYHLDDLVDMWSTMNEPNVVYNQGYINLRSGFPPGYLSFEAAEKAKFNLIQAHIGAYDAIKEYSEKSVGVIYAFAWHDPLAEEYKDEVEEIRKKDYEFVTILHSKGKLDWIGVNYYSRLVYGAKDGHLVPLPGYGFMSERGGFAKSGRPASDFGWEMYPEGLENLLKYLNNAYELPMIITENGMADAADRYRPHYLVSHLKAVYNAMKEGADVRGYLHWSLTDNYEWAQGFRMRFGLVYVDFETKKRYLRPSALVFREIATQKEIPEELAHLADLKFVTRK 472
               SCOP domains d3wdpp_ P: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee.hhhhhh.........hhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhhh...eeeee.hhhhhh.........eeee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....eeee...eeeeee....eee...hhhhh...................hhhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhh....eee......eeehhhhhhhhhhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wdp P   1 AKFPKNFMFGYSWSGFQFEMGLPGSEVESDWWVWVHDKENIASGLVSGDLPENGPAYWHLYKQDHDIAEKLGMDCIRGGIEWARIFPKPTFDVKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYRKIYSDWKERGKTFILNLYHWPLPLWIHDPIAVRKLGPDAAPAGWLDEKTVVEFVKFAAFVAYHLDDLVDMWSTMNEPNVVYNQGYINLASGFPPGFLSFEAAEKAKFNLIQAHIGAYDAIKEYSEKSVGVIYAFAWHDPLAEEYKDEVEEIRKKDYEFVTILHSKGKLDWIGVNYYSRLVYGAKDGHLVPLPGYGFMSERGGFAKSGRPASDFGWEMYPEGLENLLKYLNNAYELPMIITENGMADAADRYRPHYLVSHLKAVYNAMKEGADVRGYLHWSLTDNYEWAQGFRMRFGLVYVDFETKKRYLRPSALVFREIATQKEIPEELAHLADLKFVTRK 472
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  


Chain Q from PDB  Type:PROTEIN  Length:472
 aligned with Q51723_9EURY | Q51723 from UniProtKB/TrEMBL  Length:472

    Alignment length:472
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  
         Q51723_9EURY     1 MKFPKNFMFGYSWSGFQFEMGLPGSEVESDWWVWVHDKENIASGLVSGDLPENGPAYWHLYKQDHDIAEKLGMDCIRGGIEWARIFPKPTFDVKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYRKIYSDWKERGKTFILNLYHWPLPLWIHDPIAVRKLGPDRAPAGWLDEKTVVEFVKFAAFVAYHLDDLVDMWSTMNEPNVVYNQGYINLRSGFPPGYLSFEAAEKAKFNLIQAHIGAYDAIKEYSEKSVGVIYAFAWHDPLAEEYKDEVEEIRKKDYEFVTILHSKGKLDWIGVNYYSRLVYGAKDGHLVPLPGYGFMSERGGFAKSGRPASDFGWEMYPEGLENLLKYLNNAYELPMIITENGMADAADRYRPHYLVSHLKAVYNAMKEGADVRGYLHWSLTDNYEWAQGFRMRFGLVYVDFETKKRYLRPSALVFREIATQKEIPEELAHLADLKFVTRK 472
               SCOP domains d3wdpq_ Q: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee.hhhhhh.........hhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhhh...eeeee.hhhhhh.........eeee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....eeee...eeeeee....eee...hhhhh...................hhhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhh....eee......eeehhhhhhhhhhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wdp Q   1 AKFPKNFMFGYSWSGFQFEMGLPGSEVESDWWVWVHDKENIASGLVSGDLPENGPAYWHLYKQDHDIAEKLGMDCIRGGIEWARIFPKPTFDVKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYRKIYSDWKERGKTFILNLYHWPLPLWIHDPIAVRKLGPDAAPAGWLDEKTVVEFVKFAAFVAYHLDDLVDMWSTMNEPNVVYNQGYINLASGFPPGFLSFEAAEKAKFNLIQAHIGAYDAIKEYSEKSVGVIYAFAWHDPLAEEYKDEVEEIRKKDYEFVTILHSKGKLDWIGVNYYSRLVYGAKDGHLVPLPGYGFMSERGGFAKSGRPASDFGWEMYPEGLENLLKYLNNAYELPMIITENGMADAADRYRPHYLVSHLKAVYNAMKEGADVRGYLHWSLTDNYEWAQGFRMRFGLVYVDFETKKRYLRPSALVFREIATQKEIPEELAHLADLKFVTRK 472
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  


Chain R from PDB  Type:PROTEIN  Length:472
 aligned with Q51723_9EURY | Q51723 from UniProtKB/TrEMBL  Length:472

    Alignment length:472
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  
         Q51723_9EURY     1 MKFPKNFMFGYSWSGFQFEMGLPGSEVESDWWVWVHDKENIASGLVSGDLPENGPAYWHLYKQDHDIAEKLGMDCIRGGIEWARIFPKPTFDVKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYRKIYSDWKERGKTFILNLYHWPLPLWIHDPIAVRKLGPDRAPAGWLDEKTVVEFVKFAAFVAYHLDDLVDMWSTMNEPNVVYNQGYINLRSGFPPGYLSFEAAEKAKFNLIQAHIGAYDAIKEYSEKSVGVIYAFAWHDPLAEEYKDEVEEIRKKDYEFVTILHSKGKLDWIGVNYYSRLVYGAKDGHLVPLPGYGFMSERGGFAKSGRPASDFGWEMYPEGLENLLKYLNNAYELPMIITENGMADAADRYRPHYLVSHLKAVYNAMKEGADVRGYLHWSLTDNYEWAQGFRMRFGLVYVDFETKKRYLRPSALVFREIATQKEIPEELAHLADLKFVTRK 472
               SCOP domains d3wdpr_ R: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee.hhhhhh.........hhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhhh...eeeee.hhhhhh.........eeee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....eeee...eeeeeee..eeee...hhhhh...................hhhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhh....eee......eeehhhhhhhhhhhhhh..hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wdp R   1 AKFPKNFMFGYSWSGFQFEMGLPGSEVESDWWVWVHDKENIASGLVSGDLPENGPAYWHLYKQDHDIAEKLGMDCIRGGIEWARIFPKPTFDVKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYRKIYSDWKERGKTFILNLYHWPLPLWIHDPIAVRKLGPDAAPAGWLDEKTVVEFVKFAAFVAYHLDDLVDMWSTMNEPNVVYNQGYINLASGFPPGFLSFEAAEKAKFNLIQAHIGAYDAIKEYSEKSVGVIYAFAWHDPLAEEYKDEVEEIRKKDYEFVTILHSKGKLDWIGVNYYSRLVYGAKDGHLVPLPGYGFMSERGGFAKSGRPASDFGWEMYPEGLENLLKYLNNAYELPMIITENGMADAADRYRPHYLVSHLKAVYNAMKEGADVRGYLHWSLTDNYEWAQGFRMRFGLVYVDFETKKRYLRPSALVFREIATQKEIPEELAHLADLKFVTRK 472
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  


Chain S from PDB  Type:PROTEIN  Length:472
 aligned with Q51723_9EURY | Q51723 from UniProtKB/TrEMBL  Length:472

    Alignment length:472
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  
         Q51723_9EURY     1 MKFPKNFMFGYSWSGFQFEMGLPGSEVESDWWVWVHDKENIASGLVSGDLPENGPAYWHLYKQDHDIAEKLGMDCIRGGIEWARIFPKPTFDVKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYRKIYSDWKERGKTFILNLYHWPLPLWIHDPIAVRKLGPDRAPAGWLDEKTVVEFVKFAAFVAYHLDDLVDMWSTMNEPNVVYNQGYINLRSGFPPGYLSFEAAEKAKFNLIQAHIGAYDAIKEYSEKSVGVIYAFAWHDPLAEEYKDEVEEIRKKDYEFVTILHSKGKLDWIGVNYYSRLVYGAKDGHLVPLPGYGFMSERGGFAKSGRPASDFGWEMYPEGLENLLKYLNNAYELPMIITENGMADAADRYRPHYLVSHLKAVYNAMKEGADVRGYLHWSLTDNYEWAQGFRMRFGLVYVDFETKKRYLRPSALVFREIATQKEIPEELAHLADLKFVTRK 472
               SCOP domains d3wdps_ S: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee.hhhhhh.........hhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhhh...eeeee.hhhhhh.........eeee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....eeee...eeeeee....eee...hhhhh...................hhhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhh....eee......eeehhhhhhhhhhhhhh..hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wdp S   1 AKFPKNFMFGYSWSGFQFEMGLPGSEVESDWWVWVHDKENIASGLVSGDLPENGPAYWHLYKQDHDIAEKLGMDCIRGGIEWARIFPKPTFDVKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYRKIYSDWKERGKTFILNLYHWPLPLWIHDPIAVRKLGPDAAPAGWLDEKTVVEFVKFAAFVAYHLDDLVDMWSTMNEPNVVYNQGYINLASGFPPGFLSFEAAEKAKFNLIQAHIGAYDAIKEYSEKSVGVIYAFAWHDPLAEEYKDEVEEIRKKDYEFVTILHSKGKLDWIGVNYYSRLVYGAKDGHLVPLPGYGFMSERGGFAKSGRPASDFGWEMYPEGLENLLKYLNNAYELPMIITENGMADAADRYRPHYLVSHLKAVYNAMKEGADVRGYLHWSLTDNYEWAQGFRMRFGLVYVDFETKKRYLRPSALVFREIATQKEIPEELAHLADLKFVTRK 472
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WDP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WDP)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain P,Q,R,S   (Q51723_9EURY | Q51723)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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3apg