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(-) Description

Title :  CRYSTAL STRUCTURE OF C. ALBICANS TRNA(HIS) GUANYLYLTRANSFERASE (THG1) WITH A G-1 DELETED TRNA(HIS)
 
Authors :  A. Nakamura, T. Nemoto, T. Sonoda, K. Yamashita, I. Tanaka, M. Yao
Date :  24 May 13  (Deposition) - 18 Dec 13  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.18
Chains :  Asym./Biol. Unit :  A,B,C,D,P,Q
Keywords :  Protein-Trna Complex, Transferase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nakamura, T. Nemoto, I. U. Heinemann, K. Yamashita, T. Sonoda, K. Komoda, I. Tanaka, D. Soll, M. Yao
Structural Basis Of Reverse Nucleotide Polymerization
Proc. Natl. Acad. Sci. Usa V. 110 20970 2013
PubMed-ID: 24324136  |  Reference-DOI: 10.1073/PNAS.1321312111

(-) Compounds

Molecule 1 - LIKELY HISTIDYL TRNA-SPECIFIC GUANYLYLTRANSFERASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26B
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-262
    Gene: CAO19.7063, CAWG_05412, ORF19.7063, THG1
    Organism Common: YEAST
    Organism Scientific: CANDIDA ALBICANS
    Organism Taxid: 237561
    Strain: SC5314 / ATCC MYA-2876
 
Molecule 2 - 75-MER TRNA
    Chains: P, Q
    Engineered: YES
    Other Details: IN VITRO TRANSCRIPTION
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDPQ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3WC1)

(-) Sites  (0, 0)

(no "Site" information available for 3WC1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WC1)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Lys A:44 -Pro A:45
2Lys B:44 -Pro B:45
3Lys C:44 -Pro C:45
4Lys D:44 -Pro D:45

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WC1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WC1)

(-) Exons   (0, 0)

(no "Exon" information available for 3WC1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh.........eeeeeeee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhheeee....eee......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wc1 A   4 SKYEYVKLFEKENYLLPDTYIIIRVDGKGFHKFSQFYEFEKPNDLKALQVMNSAAEKLMSKYSDVMLAYGDSDEYSFLLRKNCQLYERREMKLTTLFSSLMSTYYMYFWSQYFPDKPLHIDHLPNFDARAVLYPDFKHIRNYFSWRQVDCHINNLYNTTFWNLVLKLKMTPQQAEQRLMGTVASDKNEILFKECGVNYNNESEMYKKGTIIVREELKIYHVDIINDDSWWKSRPWLKD 268
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213   ||  250       260        
                                                                                                                                                                                                                                               217|                       
                                                                                                                                                                                                                                                245                       


Chain B from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh.........eeeeeeee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhheeee....eee.......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wc1 B   4 SKYEYVKLFEKENYLLPDTYIIIRVDGKGFHKFSQFYEFEKPNDLKALQVMNSAAEKLMSKYSDVMLAYGDSDEYSFLLRKNCQLYERREMKLTTLFSSLMSTYYMYFWSQYFPDKPLHIDHLPNFDARAVLYPDFKHIRNYFSWRQVDCHINNLYNTTFWNLVLKLKMTPQQAEQRLMGTVASDKNEILFKECGVNYNNESEMYKKGTIIVREELKIYHVDIINDDSWWKSRPWLKD 268
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213   ||  250       260        
                                                                                                                                                                                                                                               217|                       
                                                                                                                                                                                                                                                245                       


Chain C from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh.........eeeeeeee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhheeee....eee......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wc1 C   4 SKYEYVKLFEKENYLLPDTYIIIRVDGKGFHKFSQFYEFEKPNDLKALQVMNSAAEKLMSKYSDVMLAYGDSDEYSFLLRKNCQLYERREMKLTTLFSSLMSTYYMYFWSQYFPDKPLHIDHLPNFDARAVLYPDFKHIRNYFSWRQVDCHINNLYNTTFWNLVLKLKMTPQQAEQRLMGTVASDKNEILFKECGVNYNNESEMYKKGTIIVREELKIYHVDIINDDSWWKSRPWLKD 268
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213   ||  250       260        
                                                                                                                                                                                                                                               217|                       
                                                                                                                                                                                                                                                245                       


Chain D from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh.........eeeeeeee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhheeee....eee......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wc1 D   4 SKYEYVKLFEKENYLLPDTYIIIRVDGKGFHKFSQFYEFEKPNDLKALQVMNSAAEKLMSKYSDVMLAYGDSDEYSFLLRKNCQLYERREMKLTTLFSSLMSTYYMYFWSQYFPDKPLHIDHLPNFDARAVLYPDFKHIRNYFSWRQVDCHINNLYNTTFWNLVLKLKMTPQQAEQRLMGTVASDKNEILFKECGVNYNNESEMYKKGTIIVREELKIYHVDIINDDSWWKSRPWLKD 268
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213   ||  250       260        
                                                                                                                                                                                                                                               217|                       
                                                                                                                                                                                                                                                245                       


Chain P from PDB  Type:RNA  Length:73
                                                                                                         
                 3wc1 P   1 GCCAUCAUAGUAUAGUGGUCAUUAUAAAUCGUUGUGGCCGAUUAGACCCAAGUUCGAUUCUUGGUGAUGGCAC  73
                                    10        20        30        40        50        60        70   


Chain Q from PDB  Type:RNA  Length:73
                                                                                                         
                 3wc1 Q   1 GCCAUCAUAGUAUAGUGGUCAUUAUAAAUCGUUGUGGCCGAUUAGACCCAAGUUCGAUUCUUGGUGAUGGCAC  73
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WC1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WC1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WC1)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:44 - Pro A:45   [ RasMol ]  
    Lys B:44 - Pro B:45   [ RasMol ]  
    Lys C:44 - Pro C:45   [ RasMol ]  
    Lys D:44 - Pro D:45   [ RasMol ]  
 

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 Related Entries

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(-) Related Entries Specified in the PDB File

3wbz 3wc0 3wc2