3W57 - JenaLib

Title :   STRUCTURE OF A C2 DOMAIN

Authors :   D. A. K. Traore, J. C. Whisstock

Date :   24 Jan 13 (Deposition) - 23 Oct 13 (Release) - 12 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.66

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   C2 Domain, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. A. Traore, A. J. Brennan, R. H. Law, C. Dogovski, M. A. Perugini, N. Lukoyanova, E. W. Leung, R. S. Norton, J. A. Lopez, K. A. Browne, H. Yagita, G. J. Lloyd, A. Ciccone, S. Verschoor, J. A. Trapani, J. C. Whisstock, I. Voskoboinik
Defining The Interaction Of Perforin With Calcium And The Phospholipid Membrane.
Biochem. J. V. 456 323 2013
PubMed-ID: 24070258 | Reference-DOI: 10.1042/BJ20130999

Compounds

Molecule 1 - C2 DOMAIN PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	SHUFFLE
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 21-129
	Gene	:	C2P1
	Organism Common	:	TURBOT
	Organism Scientific	:	SCOPHTHALMUS MAXIMUS
	Organism Taxid	:	52904
	Synonym	:	SMC2P1

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 6)

Asymmetric Unit (1, 6)

No.	Name	Count	Type	Full Name
1	CA	6	Ligand/Ion	CALCIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:35 , ASP A:41 , ASP A:88 , GLU A:89 , ASP A:90 , HOH A:325	BINDING SITE FOR RESIDUE CA A 201
2	AC2	SOFTWARE	ASP A:35 , ASP A:88 , ASP A:90 , ASP A:95 , HOH A:305 , HOH A:312 , HOH A:329	BINDING SITE FOR RESIDUE CA A 202
3	AC3	SOFTWARE	ILE A:39 , ASP A:41 , ASN A:61 , HOH A:303 , HOH A:317 , HOH A:327	BINDING SITE FOR RESIDUE CA A 203
4	AC4	SOFTWARE	ASP B:35 , ASP B:41 , ASP B:88 , GLU B:89 , ASP B:90 , HOH B:317	BINDING SITE FOR RESIDUE CA B 201
5	AC5	SOFTWARE	ILE B:39 , ASP B:41 , ASN B:61 , HOH B:312 , HOH B:319 , HOH B:363	BINDING SITE FOR RESIDUE CA B 202
6	AC6	SOFTWARE	ASP B:35 , ASP B:88 , ASP B:90 , ASP B:95 , HOH B:305 , HOH B:383 , HOH B:385	BINDING SITE FOR RESIDUE CA B 203

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:111
 aligned with E2FYL5_SCOMX | E2FYL5 from UniProtKB/TrEMBL  Length:129

    Alignment length:111
                                    28        38        48        58        68        78        88        98       108       118       128 
         E2FYL5_SCOMX    19 EAQLRLYNLRVRGLPSDLMGITDGYVKVFCGSANLGETSVNHNNANPWWTEEFSHFKAQENDILRLEVHDEDTFFDDLLGVCQRQIKVGTHEHDCYLKEGGTLHYMYTLSV 129
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee...........eeeeeee..eeeee...............eeeeee....eeeeeeee......eeeeeeeee...eeeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3w57 A  19 HMQLRLYNLRVRGLPSDLMGITDGYVKVFCGSANLGETSVNHNNANPWWTEEFSHFKAQENDILRLEVHDEDTFFDDLLGVCQRQIKVGTHEHDCYLKEGGTLHYMYTLSV 129
                                    28        38        48        58        68        78        88        98       108       118       128

Chain B from PDB  Type:PROTEIN  Length:111
 aligned with E2FYL5_SCOMX | E2FYL5 from UniProtKB/TrEMBL  Length:129

    Alignment length:111
                                    28        38        48        58        68        78        88        98       108       118       128 
         E2FYL5_SCOMX    19 EAQLRLYNLRVRGLPSDLMGITDGYVKVFCGSANLGETSVNHNNANPWWTEEFSHFKAQENDILRLEVHDEDTFFDDLLGVCQRQIKVGTHEHDCYLKEGGTLHYMYTLSV 129
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee...ee..ee..eeeeeee..eeeee...............eeeeee....eeeeeeee......eeeeeeeee...eeeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3w57 B  19 HMQLRLYNLRVRGLPSDLMGITDGYVKVFCGSANLGETSVNHNNANPWWTEEFSHFKAQENDILRLEVHDEDTFFDDLLGVCQRQIKVGTHEHDCYLKEGGTLHYMYTLSV 129
                                    28        38        48        58        68        78        88        98       108       118       128

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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	Cis Peptide Bonds
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Biological Units
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