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(-) Description

Title :  CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS MEMBRANE-BOUND TRANSGLYCOSYLASE IN COMPLEX WITH MOENOMYCIN
 
Authors :  C. Y. Huang, H. W. Shih, L. Y. Lin, Y. W. Tien, T. J. R. Cheng, W. C. Cheng, C. C. Ma
Date :  15 Dec 11  (Deposition) - 18 Apr 12  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.69
Chains :  Asym./Biol. Unit :  A
Keywords :  Transmembrane, Glycosyltransferase, Bacterial Cell Wall Synthesis, Membrane, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Y. Huang, H. W. Shih, L. Y. Lin, Y. W. Tien, T. J. R. Cheng, W. C. Cheng, C. H. Wong, C. Ma
Crystal Structure Of Staphylococcus Aureus Transglycosylase In Complex With A Lipid Ii Analog And Elucidation Of Peptidoglycan Synthesis Mechanism
Proc. Natl. Acad. Sci. Usa V. 109 6496 2012
PubMed-ID: 22493270  |  Reference-DOI: 10.1073/PNAS.1203900109

(-) Compounds

Molecule 1 - MONOFUNCTIONAL GLYCOSYLTRANSFERASE
    Chains: A
    EC Number: 2.4.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 28-269
    Gene: MGT
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 158878
    Strain: MU50
    Synonym: MGT, PEPTIDOGLYCAN TGASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1M0E1Ligand/IonMOENOMYCIN

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:130 , GLN A:137 , LYS A:140 , ASN A:141 , ARG A:148 , ILE A:180 , TYR A:181 , VAL A:223 , ASN A:224 , PRO A:226 , SER A:227 , GLU A:236 , ASN A:237BINDING SITE FOR RESIDUE M0E A 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VMR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:130 -Gly A:131
2Pro A:226 -Ser A:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VMR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VMR)

(-) Exons   (0, 0)

(no "Exon" information available for 3VMR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
 aligned with MGT_STAAM | Q99T05 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:229
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260         
            MGT_STAAM    41 RILLKILLTILIIIALFIGIMYFLSTRDNVDELRKIENKSSFVSADNMPEYVKGAFISMEDERFYNHHGFDLKGTTRALFSTISDRDVQGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQLNR 269
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.......hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh.--....hhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhh..........hhhhhh.....................hhhhhhhh.............hhhhhhhhhhhhhhhh....hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vmr A  41 RILLKILLTILIIIALFIGIMYFLSTRDNVDELRKIENKSSFVSADNMPEYVKGAFISMEDERFYNHHGFDLKGTTRALFSTISDRD--GGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQLNR 269
                                    50        60        70        80        90       100       110       120      |130       140       150       160       170       180       190       200       210       220       230       240       250       260         
                                                                                                                127  |                                                                                                                                           
                                                                                                                   130
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VMR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VMR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VMR)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (MGT_STAAM | Q99T05)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0071555    cell wall organization    A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
    GO:0009252    peptidoglycan biosynthetic process    The chemical reactions and pathways resulting in the formation of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MGT_STAAM | Q99T05: 3vmq 3vms 3vmt

(-) Related Entries Specified in the PDB File

3vmq 3vms 3vmt