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(-) Description

Title :  CRYSTAL STRUCTURE OF CAPSULAR POLYSACCHARIDE ASSEMBLING PROTEIN CAPF FROM STAPHYLOCOCCUS AUREUS IN SPACE GROUP C2221
 
Authors :  T. Miyafusa, T. Yoshikazu, J. M. M. Caaveiro, K. Tsumoto
Date :  01 Sep 11  (Deposition) - 15 Feb 12  (Release) - 13 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Rossmann Fold, Cupin Domain, Short-Chain Dehydrogenase/Reductase, Nadph-Dependent Udp-4-Hexulose Reductase, Zn2+, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Miyafusa, J. M. Caaveiro, Y. Tanaka, K. Tsumoto
Crystal Structure Of The Enzyme Capf Of Staphylococcus Aureus Reveals A Unique Architecture Composed Of Two Functional Domains.
Biochem. J. V. 443 671 2012
PubMed-ID: 22320426  |  Reference-DOI: 10.1042/BJ20112049
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CAPSULAR POLYSACCHARIDE SYNTHESIS ENZYME CAP5F
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26
    Expression System Strain: ROSSETTA 2 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CAPF, SAV0154
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 158878
    Strain: STRAIN MU50 / ATCC 700699

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1FMT2Ligand/IonFORMIC ACID
2MSE5Mod. Amino AcidSELENOMETHIONINE
3ZN1Ligand/IonZINC ION
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1FMT4Ligand/IonFORMIC ACID
2MSE10Mod. Amino AcidSELENOMETHIONINE
3ZN-1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:288 , HIS A:290 , GLU A:295 , HIS A:337BINDING SITE FOR RESIDUE ZN A 400
2AC2SOFTWAREPHE A:215 , ARG A:219 , TYR A:236 , LYS A:296 , ASP A:330BINDING SITE FOR RESIDUE FMT A 370
3AC3SOFTWAREARG A:271 , GLY A:272BINDING SITE FOR RESIDUE FMT A 371

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VHR)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:343
 aligned with A0A0H3JP37_S | A0A0H3JP37 from UniProtKB/TrEMBL  Length:369

    Alignment length:369
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360         
         A0A0H3JP37_S     1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYLSYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVNEMFDPNQPDTYFLEV 369
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhh.eeee..-----------.....hhhhhhhhhhh......eeeee..---------------.hhhhhhhhhhhh..eeee...eee.........hhhhhhhhhhhh...........eeeeeehhhhhhhhhhhhh....ee..ee.....eeeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh............eee...eeeeeeee.....eeeeeee....eeeeee.....eeeeeee.eeeeeeee.....eeeeeee.....eeee...eeeeeee.....eeeeeee...........ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vhr A   1 mNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLA-----------SLGNVSYLDHVLDILTRNTKKPAILLSSS---------------GEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYLSYLPSTDFSYPLLmNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDmVTImWVNEmFDPNQPDTYFLEV 369
                            |       10        20        30        40        50   |     -     |  70        80        90   |     -       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250   |   260       270       280       290       300       310       320       330       340      |350|    | 360         
                            |                                                   54          66                          94             110                                                                                                                                             254-MSE                                                                                      347-MSE    |             
                            1-MSE                                                                                                                                                                                                                                                                                                                                                       351-MSE|             
                                                                                                                                                                                                                                                                                                                                                                                             356-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VHR)

(-) CATH Domains  (0, 0)

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 Related Entries

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        A0A0H3JP37_S | A0A0H3JP37: 2zkl 3st7 4yrd

(-) Related Entries Specified in the PDB File

3st7 CAPF CRYSTALLIZED IN SPACE GROUP P 32 2 1