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(-)Asym./Biol. Unit
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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF BFPC
 
Authors :  A. Yamagata, J. A. Tainer, M. S. Donnenberg
Date :  25 Aug 11  (Deposition) - 23 May 12  (Release) - 23 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Type Iv Pilus Biogenesis, Bfpd, Membrane, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Yamagata, E. Milgotina, K. Scanlon, L. Craig, J. A. Tainer, M. S. Donnenberg
Structure Of An Essential Type Iv Pilus Biogenesis Protein Provides Insights Into Pilus And Type Ii Secretion Systems
J. Mol. Biol. V. 419 110 2012
PubMed-ID: 22387466  |  Reference-DOI: 10.1016/J.JMB.2012.02.041

(-) Compounds

Molecule 1 - BFPC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRPA302
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: N TERMINAL DOMAIN, UNP RESIDUES 1-165
    Gene: BFPC, MAR006
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: PUTATIVE UNCHARACTERIZED PROTEIN BFPC

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3VHJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VHJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3VHJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VHJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VHJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3VHJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with B7UTD4_ECO27 | B7UTD4 from UniProtKB/TrEMBL  Length:402

    Alignment length:162
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162  
         B7UTD4_ECO27     3 KNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTLMSSKLYSVIGRFQGEQFAVGDKNIGHKRGQVTLLSAIDFDGSSFCGLFPADNELWLVIGVDKDGMVHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESRSISELSLIKGKKLKEK 164
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeee..eeee...eee......hhhhhhhhhhhhhh..eeeeeee..eeeeee.hhhhh.....eehhhhh......eeeeee.....eeeeee.....eeeeeee.hhhhhhhhhhhhh.......eee...........hhhhh........ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3vhj A   3 KNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTLmSSKLYSVIGRFQGEQFAVGDKNIGHKRGQVTLLSAIDFDGSSFCGLFPADNELWLVIGVDKDGmVHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESRSISELSLIKGKKLKEK 164
                                    12        22        32        42        52        62        72        82        92       102   |   112       122       132       142       152       162  
                                                                  42-MSE                                                         106-MSE                                                      


Chain A from PDB  Type:PROTEIN  Length:162
 aligned with Q57029_ECOLX | Q57029 from UniProtKB/TrEMBL  Length:402

    Alignment length:162
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162  
         Q57029_ECOLX     3 KNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTLMSSKLYSVIGRFQGEQFAVGDKNIGHKRGQVTLLSAIDFDGSSFCGLFPADNELWLVIGVDKDGMVHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESRSISELSLIKGKKLKEK 164
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeee..eeee...eee......hhhhhhhhhhhhhh..eeeeeee..eeeeee.hhhhh.....eehhhhh......eeeeee.....eeeeee.....eeeeeee.hhhhhhhhhhhhh.......eee...........hhhhh........ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3vhj A   3 KNNLGVAVIGSKQYAVNLLWGSSQDTETTNQALNKSLTLmSSKLYSVIGRFQGEQFAVGDKNIGHKRGQVTLLSAIDFDGSSFCGLFPADNELWLVIGVDKDGmVHFDKSFHSKDDAKKFFFDHVAYGYPWDRTYSPSDVGVGESRSISELSLIKGKKLKEK 164
                                    12        22        32        42        52        62        72        82        92       102   |   112       122       132       142       152       162  
                                                                  42-MSE                                                         106-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VHJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VHJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VHJ)

(-) Gene Ontology  (2, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q57029_ECOLX | Q57029)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A   (B7UTD4_ECO27 | B7UTD4)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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