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(-) Description

Title :  CRYSTAL STRUCTURE OF ENOLASE FG03645.1 (TARGET EFI-502278) FROM GIBBERELLA ZEAE PH-1 COMPLEXED WITH MAGNESIUM, FORMATE AND SULFATE
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washin A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, W. D. Zencheck, H J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Date :  29 Dec 11  (Deposition) - 01 Feb 12  (Release) - 07 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Enolase, Magnesium Binding Site, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, W. D. Zencheck, H. J. Imker, J. A. Gerlt, S. C. Almo
Crystal Structure Of Dehydratase Fg03645. 1 From Gibberella Zeae Ph-1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROBABLE DEHYDRATASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: GIBBERELLA ZEAE
    Organism Taxid: 5518
    Strain: PH-1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2MG1Ligand/IonMAGNESIUM ION
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1FMT2Ligand/IonFORMIC ACID
2MG-1Ligand/IonMAGNESIUM ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:24 , HIS A:29 , MET A:101 , LYS A:192 , ASN A:321 , HIS A:348 , ARG A:403 , HOH A:479 , HOH A:508 , HOH A:529 , HOH A:593BINDING SITE FOR RESIDUE SO4 A 424
2AC2SOFTWAREASP A:220 , GLU A:245 , ASN A:268 , FMT A:426 , HOH A:428BINDING SITE FOR RESIDUE MG A 425
3AC3SOFTWARETYR A:148 , LYS A:190 , LYS A:192 , ASP A:220 , ASN A:222 , GLU A:245 , ASN A:268 , HIS A:319 , MG A:425 , HOH A:428 , HOH A:529 , HOH A:548BINDING SITE FOR RESIDUE FMT A 426

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VA8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ile A:420 -Pro A:421

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VA8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VA8)

(-) Exons   (0, 0)

(no "Exon" information available for 3VA8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:427
                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d3va8a1 A:-5-136 automated matches                                                                                                          d3va8a2 A:137-423 automated matches                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...eeeeeeeeee....ee..ee...eeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee..eeee..................hhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh.....eee...hhhhhhhhhhh.....eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhh..........hhhhh.............ee..eee...........hhhhhhhhhhhhhhhh....hhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3va8 A  -5 NLYFQSMSQRSIIKEIVITPVAFHDMPLLNSVGVHEPFALRSIIEIITEDSYGLGESYGDSAHLDRLQKAADKIKGLSVYSTNVIYQRCVESLRNDTNGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGGRVRDSVQYSAYLFYKWGGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGVFPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWVAKELEGIVEYLEDPAGEIEGMAAVAKEASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQTLASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLDYACDTHWPWKRRDEDVVIEGALKWKDGGVIVPSGPGLGVELDRERLAKLHQQYVDCGLKKRDDTTYMKRFKPEFSEKIPRW 423
                                     4        14        24        34        44        54        64        74        84       |96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       
                                                                                                                            92|                                                                                                                                                                                                                                                                                                                                        
                                                                                                                             95
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VA8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VA8)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3VA8)

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