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(-) Description

Title :  THE CRYSTAL STRUCTURE OF TRANSFERRIN BINDING PROTEIN B (TBPB) FROM NEISSERIA MENINGITIDIS SEROGROUP B
 
Authors :  N. Noinaj, N. Easley, S. K. Buchanan
Date :  23 Dec 11  (Deposition) - 15 Feb 12  (Release) - 18 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferrin Binding Protein, Lipoprotein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Noinaj, N. C. Easley, M. Oke, N. Mizuno, J. Gumbart, E. Boura, A. N. Steere, O. Zak, P. Aisen, E. Tajkhorshid, R. W. Evans, A. R. Gorringe, A. B. Mason, A. C. Steven, S. K. Buchanan
Structural Basis For Iron Piracy By Pathogenic Neisseria.
Nature V. 483 53 2012
PubMed-ID: 22327295  |  Reference-DOI: 10.1038/NATURE10823

(-) Compounds

Molecule 1 - TRANSFERRIN BINDING-PROTEIN B
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TBPB
    Organism Scientific: NEISSERIA MENINGITIDIS SEROGROUP B
    Organism Taxid: 491

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3V8U)

(-) Sites  (0, 0)

(no "Site" information available for 3V8U)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:486 -A:487
2B:486 -B:487

(-) Cis Peptide Bonds  (18, 18)

Asymmetric Unit
No.Residues
1Glu A:91 -Thr A:92
2Tyr A:129 -Glu A:130
3Glu A:153 -Pro A:154
4Gly A:197 -Gln A:198
5Asp A:221 -Gly A:222
6Gln A:270 -Ala A:271
7Leu A:392 -Gly A:393
8Cys A:486 -Cys A:487
9Tyr A:661 -Pro A:662
10Glu B:91 -Thr B:92
11Tyr B:129 -Glu B:130
12Glu B:153 -Pro B:154
13Gly B:197 -Gln B:198
14Asp B:221 -Gly B:222
15Gln B:270 -Ala B:271
16Leu B:392 -Gly B:393
17Cys B:486 -Cys B:487
18Tyr B:661 -Pro B:662

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3V8U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3V8U)

(-) Exons   (0, 0)

(no "Exon" information available for 3V8U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:532
 aligned with Q9JPI9_NEIME | Q9JPI9 from UniProtKB/TrEMBL  Length:712

    Alignment length:651
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707 
         Q9JPI9_NEIME    58 QGGYGFAMRLKRRNWYPQAKEDEVKLDESDWEATGLPDEPKELPKRQKSVIEKVETDSDNNIYSSPYLKPSNHQNGNTGNGINQPKNQAKDYENFKYVYSGWFYKHAKREFNLKVEPKSAKNGDDGYIFYHGKEPSRQLPASGKITYKGVWHFATDTKKGQKFREIIQPSKSQGDRYSGFSGDDGEEYSNKNKSTLTDGQEGYGFTSNLEVDFHNKKLTGKLIRNNANTDNNQATTTQYYSLEAQVTGNRFNGKATATDKPQQNSETKEHPFVSDSSSLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDKPANGNTAAASGGTDAAASNGAAGTSSENGKLTTVLDAVELKLGDKKVQKLDNFSNAAQLVVDGIMIPLLPEASESGNNQANQGTNGGTAFTRKFDHTPESDKKDAQAGTQTNGAQTASNTAGDTNGKTKTYEVEVCCSNLNYLKYGMLTRKNSKSAMQAGESSSQADAKTEQVEQSMFLQGERTDEKEIPSEQNIVYRGSWYGYIANDKSTSWSGNASNATSGNRAEFTVNFADKKITGTLTADNRQEATFTIDGNIKDNGFEGTAKTAESGFDLDQSNTTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPGDKQTKNATNASGNSSATVVFGAKRQ 708
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.................hhhhhee..........hhhhhhhhhh.........ee......-------------..............eeeeeeeeeeeeeee......eeeeeeeeeeeeee.....eee...eeeeeeeeeeee.................................................eeeeeeee....eeeeeeee...............eeeeeeee..eeeeeeee..................eeeeeeeee.....eeeeeee.....eeeeeee.....-----------------------------.eee.eeeeeee.....eee........eeee..eeee...------------------..eeeeee..------------------------------..eeeeee......eeeeeeee..--------------------.eeeeeeeee............eeeeeeeeeeeee....eeee.........eeeeeee....eeeeeee........eeeeeeee..eeeeeee.......................eeeeeeee.....eeeeeeee...---------...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v8u A  37 QGGYGFAMRLKRRNWYPQAKEDEVKLDESDWEATGLPDEPKELPKRQKSVIEKVETDSDNNIYSSPYLKP-------------QPKNQAKDYENFKYVYSGWFYKHAKREFNLKVEPKSAKNGDDGYIFYHGKEPSRQLPASGKITYKGVWHFATDTKKGQKFREIIQPSKSQGDRYSGFSGDDGEEYSNKNKSTLTDGQEGYGFTSNLEVDFHNKKLTGKLIRNNANTDNNQATTTQYYSLEAQVTGNRFNGKATATDKPQQNSETKEHPFVSDSSSLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDK-----------------------------KLTTVLDAVELKLGDKKVQKLDNFSNAAQLVVDGIMIPLLP------------------AFTRKFDHTP------------------------------KTYEVEVCCSNLNYLKYGMLTRKN--------------------VEQSMFLQGERTDEKEIPSEQNIVYRGSWYGYIANDKSTSWSGNASNATSGNRAEFTVNFADKKITGTLTADNRQEATFTIDGNIKDNGFEGTAKTAESGFDLDQSNTTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPGD---------SGNSSATVVFGAKRQ 688
                                    46        56        66        76        86        96       106         -   |   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347  |      -         -         -  |    387       397       407       417  |      -         - |     447|        -         -         - |     487       497    |    -         -     | 527       537       547       557       567       577       587       597       607       617       627       637       647       657      |  -      |677       687 
                                                                                               106           121                                                                                                                                                                                                                                  350                           380                                     420                439      448                            479                    502                  523                                                                                                                                          664       674              


Chain A from PDB  Type:PROTEIN  Length:532
 aligned with TBPB_NEIMB | Q9K0V0 from UniProtKB/Swiss-Prot  Length:712

    Alignment length:651
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707 
           TBPB_NEIMB    58 QGGYGFAMRLKRRNWYPQAKEDEVKLDESDWEATGLPDEPKELPKRQKSVIEKVETDSDNNIYSSPYLKPSNHQNGNTGNGINQPKNQAKDYENFKYVYSGWFYKHAKREFNLKVEPKSAKNGDDGYIFYHGKEPSRQLPASGKITYKGVWHFATDTKKGQKFREIIQPSKSQGDRYSGFSGDDGEEYSNKNKSTLTDGQEGYGFTSNLEVDFHNKKLTGKLIRNNANTDNNQATTTQYYSLEAQVTGNRFNGKATATDKPQQNSETKEHPFVSDSSSLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDKPANGNTAAASGGTDAAASNGAAGTSSENGKLTTVLDAVELKLGDKEVQKLDNFSNAAQLVVDGIMIPLLPEASESGNNQANQGTNGGTAFTRKFDHTPESDKKDAQAGTQTNGAQTASNTAGDTNGKTKTYEVEVCCSNLNYLKYGMLTRKNSKSAMQAGESSSQADAKTEQVEQSMFLQGERTDEKEIPSEQNIVYRGSWYGYIANDKSTSWSGNASNATSGNRAEFTVNFADKKITGTLTADNRQEATFTIDGNIKDNGFEGTAKTAESGFDLDQSNTTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPGDKQTKNATNASGNSSATVVFGAKRQ 708
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.................hhhhhee..........hhhhhhhhhh.........ee......-------------..............eeeeeeeeeeeeeee......eeeeeeeeeeeeee.....eee...eeeeeeeeeeee.................................................eeeeeeee....eeeeeeee...............eeeeeeee..eeeeeeee..................eeeeeeeee.....eeeeeee.....eeeeeee.....-----------------------------.eee.eeeeeee.....eee........eeee..eeee...------------------..eeeeee..------------------------------..eeeeee......eeeeeeee..--------------------.eeeeeeeee............eeeeeeeeeeeee....eeee.........eeeeeee....eeeeeee........eeeeeeee..eeeeeee.......................eeeeeeee.....eeeeeeee...---------...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v8u A  37 QGGYGFAMRLKRRNWYPQAKEDEVKLDESDWEATGLPDEPKELPKRQKSVIEKVETDSDNNIYSSPYLKP-------------QPKNQAKDYENFKYVYSGWFYKHAKREFNLKVEPKSAKNGDDGYIFYHGKEPSRQLPASGKITYKGVWHFATDTKKGQKFREIIQPSKSQGDRYSGFSGDDGEEYSNKNKSTLTDGQEGYGFTSNLEVDFHNKKLTGKLIRNNANTDNNQATTTQYYSLEAQVTGNRFNGKATATDKPQQNSETKEHPFVSDSSSLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDK-----------------------------KLTTVLDAVELKLGDKKVQKLDNFSNAAQLVVDGIMIPLLP------------------AFTRKFDHTP------------------------------KTYEVEVCCSNLNYLKYGMLTRKN--------------------VEQSMFLQGERTDEKEIPSEQNIVYRGSWYGYIANDKSTSWSGNASNATSGNRAEFTVNFADKKITGTLTADNRQEATFTIDGNIKDNGFEGTAKTAESGFDLDQSNTTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPGD---------SGNSSATVVFGAKRQ 688
                                    46        56        66        76        86        96       106         -   |   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347  |      -         -         -  |    387       397       407       417  |      -         - |     447|        -         -         - |     487       497    |    -         -     | 527       537       547       557       567       577       587       597       607       617       627       637       647       657      |  -      |677       687 
                                                                                               106           121                                                                                                                                                                                                                                  350                           380                                     420                439      448                            479                    502                  523                                                                                                                                          664       674              


Chain B from PDB  Type:PROTEIN  Length:532
 aligned with Q9JPI9_NEIME | Q9JPI9 from UniProtKB/TrEMBL  Length:712

    Alignment length:651
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707 
         Q9JPI9_NEIME    58 QGGYGFAMRLKRRNWYPQAKEDEVKLDESDWEATGLPDEPKELPKRQKSVIEKVETDSDNNIYSSPYLKPSNHQNGNTGNGINQPKNQAKDYENFKYVYSGWFYKHAKREFNLKVEPKSAKNGDDGYIFYHGKEPSRQLPASGKITYKGVWHFATDTKKGQKFREIIQPSKSQGDRYSGFSGDDGEEYSNKNKSTLTDGQEGYGFTSNLEVDFHNKKLTGKLIRNNANTDNNQATTTQYYSLEAQVTGNRFNGKATATDKPQQNSETKEHPFVSDSSSLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDKPANGNTAAASGGTDAAASNGAAGTSSENGKLTTVLDAVELKLGDKKVQKLDNFSNAAQLVVDGIMIPLLPEASESGNNQANQGTNGGTAFTRKFDHTPESDKKDAQAGTQTNGAQTASNTAGDTNGKTKTYEVEVCCSNLNYLKYGMLTRKNSKSAMQAGESSSQADAKTEQVEQSMFLQGERTDEKEIPSEQNIVYRGSWYGYIANDKSTSWSGNASNATSGNRAEFTVNFADKKITGTLTADNRQEATFTIDGNIKDNGFEGTAKTAESGFDLDQSNTTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPGDKQTKNATNASGNSSATVVFGAKRQ 708
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.................hhhhhee..........hhhhhhhhhh.........ee......-------------..............eeeeeeeeeeeeeee......eeeeeeeeeeeeee.....eee...eeeeeeeeeeee.................................................eeeeeeee....eeeeeeee...............eeeeeeee..eeeeeeee..................eeeeeeeee.....eeeeeee.....eeeeeee.....-----------------------------.eee.eeeeeee.....eee........eeee..eeee...------------------..eeeeee..------------------------------..eeeeee......eeeeeeee..--------------------.eeeeeeeee............eeeeeeeeeeeee....eeee.........eeeeeee....eeeeeee........eeeeeeee..eeeeeee.......................eeeeeeee.....eeeeeeee...---------...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v8u B  37 QGGYGFAMRLKRRNWYPQAKEDEVKLDESDWEATGLPDEPKELPKRQKSVIEKVETDSDNNIYSSPYLKP-------------QPKNQAKDYENFKYVYSGWFYKHAKREFNLKVEPKSAKNGDDGYIFYHGKEPSRQLPASGKITYKGVWHFATDTKKGQKFREIIQPSKSQGDRYSGFSGDDGEEYSNKNKSTLTDGQEGYGFTSNLEVDFHNKKLTGKLIRNNANTDNNQATTTQYYSLEAQVTGNRFNGKATATDKPQQNSETKEHPFVSDSSSLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDK-----------------------------KLTTVLDAVELKLGDKKVQKLDNFSNAAQLVVDGIMIPLLP------------------AFTRKFDHTP------------------------------KTYEVEVCCSNLNYLKYGMLTRKN--------------------VEQSMFLQGERTDEKEIPSEQNIVYRGSWYGYIANDKSTSWSGNASNATSGNRAEFTVNFADKKITGTLTADNRQEATFTIDGNIKDNGFEGTAKTAESGFDLDQSNTTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPGD---------SGNSSATVVFGAKRQ 688
                                    46        56        66        76        86        96       106         -   |   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347  |      -         -         -  |    387       397       407       417  |      -         - |     447|        -         -         - |     487       497    |    -         -     | 527       537       547       557       567       577       587       597       607       617       627       637       647       657      |  -      |677       687 
                                                                                               106           121                                                                                                                                                                                                                                  350                           380                                     420                439      448                            479                    502                  523                                                                                                                                          664       674              


Chain B from PDB  Type:PROTEIN  Length:532
 aligned with TBPB_NEIMB | Q9K0V0 from UniProtKB/Swiss-Prot  Length:712

    Alignment length:651
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707 
           TBPB_NEIMB    58 QGGYGFAMRLKRRNWYPQAKEDEVKLDESDWEATGLPDEPKELPKRQKSVIEKVETDSDNNIYSSPYLKPSNHQNGNTGNGINQPKNQAKDYENFKYVYSGWFYKHAKREFNLKVEPKSAKNGDDGYIFYHGKEPSRQLPASGKITYKGVWHFATDTKKGQKFREIIQPSKSQGDRYSGFSGDDGEEYSNKNKSTLTDGQEGYGFTSNLEVDFHNKKLTGKLIRNNANTDNNQATTTQYYSLEAQVTGNRFNGKATATDKPQQNSETKEHPFVSDSSSLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDKPANGNTAAASGGTDAAASNGAAGTSSENGKLTTVLDAVELKLGDKEVQKLDNFSNAAQLVVDGIMIPLLPEASESGNNQANQGTNGGTAFTRKFDHTPESDKKDAQAGTQTNGAQTASNTAGDTNGKTKTYEVEVCCSNLNYLKYGMLTRKNSKSAMQAGESSSQADAKTEQVEQSMFLQGERTDEKEIPSEQNIVYRGSWYGYIANDKSTSWSGNASNATSGNRAEFTVNFADKKITGTLTADNRQEATFTIDGNIKDNGFEGTAKTAESGFDLDQSNTTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPGDKQTKNATNASGNSSATVVFGAKRQ 708
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.................hhhhhee..........hhhhhhhhhh.........ee......-------------..............eeeeeeeeeeeeeee......eeeeeeeeeeeeee.....eee...eeeeeeeeeeee.................................................eeeeeeee....eeeeeeee...............eeeeeeee..eeeeeeee..................eeeeeeeee.....eeeeeee.....eeeeeee.....-----------------------------.eee.eeeeeee.....eee........eeee..eeee...------------------..eeeeee..------------------------------..eeeeee......eeeeeeee..--------------------.eeeeeeeee............eeeeeeeeeeeee....eeee.........eeeeeee....eeeeeee........eeeeeeee..eeeeeee.......................eeeeeeee.....eeeeeeee...---------...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v8u B  37 QGGYGFAMRLKRRNWYPQAKEDEVKLDESDWEATGLPDEPKELPKRQKSVIEKVETDSDNNIYSSPYLKP-------------QPKNQAKDYENFKYVYSGWFYKHAKREFNLKVEPKSAKNGDDGYIFYHGKEPSRQLPASGKITYKGVWHFATDTKKGQKFREIIQPSKSQGDRYSGFSGDDGEEYSNKNKSTLTDGQEGYGFTSNLEVDFHNKKLTGKLIRNNANTDNNQATTTQYYSLEAQVTGNRFNGKATATDKPQQNSETKEHPFVSDSSSLSGGFFGPQGEELGFRFLSDDQKVAVVGSAKTKDK-----------------------------KLTTVLDAVELKLGDKKVQKLDNFSNAAQLVVDGIMIPLLP------------------AFTRKFDHTP------------------------------KTYEVEVCCSNLNYLKYGMLTRKN--------------------VEQSMFLQGERTDEKEIPSEQNIVYRGSWYGYIANDKSTSWSGNASNATSGNRAEFTVNFADKKITGTLTADNRQEATFTIDGNIKDNGFEGTAKTAESGFDLDQSNTTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPGD---------SGNSSATVVFGAKRQ 688
                                    46        56        66        76        86        96       106         -   |   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347  |      -         -         -  |    387       397       407       417  |      -         - |     447|        -         -         - |     487       497    |    -         -     | 527       537       547       557       567       577       587       597       607       617       627       637       647       657      |  -      |677       687 
                                                                                               106           121                                                                                                                                                                                                                                  350                           380                                     420                439      448                            479                    502                  523                                                                                                                                          664       674
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3V8U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3V8U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3V8U)

(-) Gene Ontology  (3, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9JPI9_NEIME | Q9JPI9)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A,B   (TBPB_NEIMB | Q9K0V0)
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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Asymmetric Unit
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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 3v8u)
 
  Cis Peptide Bonds
    Asp A:221 - Gly A:222   [ RasMol ]  
    Asp B:221 - Gly B:222   [ RasMol ]  
    Cys A:486 - Cys A:487   [ RasMol ]  
    Cys B:486 - Cys B:487   [ RasMol ]  
    Gln A:270 - Ala A:271   [ RasMol ]  
    Gln B:270 - Ala B:271   [ RasMol ]  
    Glu A:153 - Pro A:154   [ RasMol ]  
    Glu A:91 - Thr A:92   [ RasMol ]  
    Glu B:153 - Pro B:154   [ RasMol ]  
    Glu B:91 - Thr B:92   [ RasMol ]  
    Gly A:197 - Gln A:198   [ RasMol ]  
    Gly B:197 - Gln B:198   [ RasMol ]  
    Leu A:392 - Gly A:393   [ RasMol ]  
    Leu B:392 - Gly B:393   [ RasMol ]  
    Tyr A:129 - Glu A:130   [ RasMol ]  
    Tyr A:661 - Pro A:662   [ RasMol ]  
    Tyr B:129 - Glu B:130   [ RasMol ]  
    Tyr B:661 - Pro B:662   [ RasMol ]  
 
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  3v8u
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3V8U)

(-) Related Entries Specified in the PDB File

3v83 3v89 3v8x