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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MUTANT E234A OF GALACTURONATE DEHYDRATASE FROM GEOBACILLUS SP. COMPLEXED WITH MG
 
Authors :  A. A. Fedorov, E. V. Fedorov, F. Groninger-Poe, J. A. Gerlt, S. C. Almo
Date :  16 Dec 11  (Deposition) - 19 Dec 12  (Release) - 19 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Enolase Fold, Galacturonate Dehydratase, Double Mg Site, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Fedorov, E. V. Fedorov, F. Groninger-Poe, J. A. Gerlt, S. C. Almo
Crystal Structure Of The Mutant E234A Of Galacturonate Dehydratase From Geobacillus Sp. Complexed With Mg
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GYMC10_3367
    Mutation: YES
    Organism Scientific: PAENIBACILLUS SP.
    Organism Taxid: 481743
    Strain: Y412MC10

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1MG7Ligand/IonMAGNESIUM ION
2PEG6Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:238 , ASP A:261 , HOH A:1441 , HOH A:1443 , HOH A:1446 , HOH A:1450BINDING SITE FOR RESIDUE MG A 393
02AC2SOFTWARETRP A:68 , ASP A:71 , TYR A:91 , HOH A:1034BINDING SITE FOR RESIDUE PEG A 394
03AC3SOFTWAREGLU B:238 , ASP B:261 , HOH B:1442 , HOH B:1447 , HOH B:1449 , HOH B:1451BINDING SITE FOR RESIDUE MG B 393
04AC4SOFTWAREASP B:207 , GLU B:233 , HOH B:425 , HOH B:426 , HOH B:430 , HOH B:1468 , HOH B:1479BINDING SITE FOR RESIDUE MG B 394
05AC5SOFTWAREASP B:371 , HOH B:435 , HOH B:543 , HOH B:952 , HOH B:1095 , HOH B:1533BINDING SITE FOR RESIDUE MG B 395
06AC6SOFTWAREASN B:215BINDING SITE FOR RESIDUE PEG B 396
07AC7SOFTWARETRP B:68 , ASP B:71 , TYR B:91BINDING SITE FOR RESIDUE PEG B 397
08AC8SOFTWAREGLU C:238 , ASP C:261 , HOH C:1444 , HOH C:1448 , HOH C:1453 , HOH C:1455BINDING SITE FOR RESIDUE MG C 393
09AC9SOFTWARETYR A:376 , TYR C:376 , HOH C:1085BINDING SITE FOR RESIDUE PEG C 394
10BC1SOFTWAREARG C:176 , PRO C:179 , HOH C:1171 , HOH C:1486 , ASN D:215BINDING SITE FOR RESIDUE PEG C 395
11BC2SOFTWAREARG C:75 , TYR C:91BINDING SITE FOR RESIDUE PEG C 396
12BC3SOFTWAREGLU D:238 , ASP D:261 , HOH D:1452 , HOH D:1454 , HOH D:1456 , HOH D:1457BINDING SITE FOR RESIDUE MG D 393
13BC4SOFTWAREASP D:207 , GLU D:233 , HOH D:408 , HOH D:905 , HOH D:1131 , HOH D:1506BINDING SITE FOR RESIDUE MG D 394

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3V5C)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Trp A:288 -Pro A:289
2Trp B:288 -Pro B:289
3Trp C:288 -Pro C:289
4Trp D:288 -Pro D:289

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3V5C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3V5C)

(-) Exons   (0, 0)

(no "Exon" information available for 3V5C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:386
 aligned with D3EID5_GEOS4 | D3EID5 from UniProtKB/TrEMBL  Length:382

    Alignment length:386
                             1                                                                                                                                                                                                                                                                                                                                                                                          382   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379  |   
         D3EID5_GEOS4     - -MNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWS---   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeeeeeeeeee.........eeeeeeeeeeeee..eeeeee....hhhhhhh....hhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.........eeeeeeeeee........hhhhhhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh......eee.....hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh....ee.......hhhhhhhhhhhhhhh..ee.......hhhhhhhhhhhhhh.....eee..eee..ee....eee..eeee........eehhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5c A   2 SLNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEAAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWSEGH 387
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381      


Chain B from PDB  Type:PROTEIN  Length:376
 aligned with D3EID5_GEOS4 | D3EID5 from UniProtKB/TrEMBL  Length:382

    Alignment length:384
                                                                                                                                                                                                                                                                                                                                                                                                                       382  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380 |  
         D3EID5_GEOS4     1 MNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWS--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeeee.........eeeeeeeeeeeee..eeeeee....hhhhhhh....hhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhh--------.eeeeeeeeee........hhhhhhhhhhhhhhhhhhh....eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhh....eeee.......hhhhhhhh....ee.......hhhhhhhhhhhhhhh..ee.......hhhhhhhhhhh........eee..eee..ee....eee..eeee........eehhhhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3v5c B   3 LNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVS--------SLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEAAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWSEG 386
                                    12        22        32        42        52        62        72        82        92       102       112   |     -  |    132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
                                                                                                                                           116      125                                                                                                                                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:385
 aligned with D3EID5_GEOS4 | D3EID5 from UniProtKB/TrEMBL  Length:382

    Alignment length:385
                                                                                                                                                                                                                                                                                                                                                                                                                       382   
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380 |   
         D3EID5_GEOS4     1 MNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWS---   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeeee.........eeeeeeeeeeeee..eeeeee....hhhhhhh....hhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.........eeeeeeeeee........hhhhhhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh....ee.......hhhhhhhhhhhhhhh..ee.......hhhhhhhhhhhhhh.....eee..eee..ee....eee..eeee........eehhhhhhhhhhhhheeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5c C   3 LNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEAAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWSEGH 387
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382     


Chain D from PDB  Type:PROTEIN  Length:376
 aligned with D3EID5_GEOS4 | D3EID5 from UniProtKB/TrEMBL  Length:382

    Alignment length:384
                                                                                                                                                                                                                                                                                                                                                                                                                       382  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380 |  
         D3EID5_GEOS4     1 MNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWS--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeeee.........eeeeeeeeeeeee..eeeeee....hhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhh.--------.eeeeeeeeee........hhhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh....ee.......hhhhhhhhhhhhhhh..ee......hhhhhhhhhhhh........eee..eee..ee....eee..eeee........eehhhhhhhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3v5c D   3 LNITGIQSDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAEDVIGRRLLDLFDDRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVS--------SLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEAAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRSGWSEG 386
                                    12        22        32        42        52        62        72        82        92       102       112   |     -  |    132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
                                                                                                                                           116      125
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3V5C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3V5C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3V5C)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (D3EID5_GEOS4 | D3EID5)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D3EID5_GEOS4 | D3EID5: 3n4f 3ops 3p3b 3qpe 3v5f 3vcc

(-) Related Entries Specified in the PDB File

3p3b THE SAME WILD TYPE PROTEIN COMPLEXED WITH TARTRATE
3v5f