3UQ3 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   TPR2AB-DOMAIN:PHSP90-COMPLEX OF YEAST STI1

Authors :   A. B. Schmid, S. Lagleder, M. A. Graewert, A. Roehl, F. Hagn, S. K. Wandin M. B. Cox, O. Demmer, K. Richter, M. Groll, H. Kessler, J. Buchner

Date :   19 Nov 11 (Deposition) - 18 Jan 12 (Release) - 04 Apr 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Hsp90, Peptide Binding, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. B. Schmid, S. Lagleder, M. A. Grawert, A. Rohl, F. Hagn, S. K. Wandinger, M. B. Cox, O. Demmer, K. Richter, M. Groll, H. Kessler, J. Buchner
The Architecture Of Functional Modules In The Hsp90 Co-Chaperone Sti1/Hop.
Embo J. V. 31 1506 2012
PubMed-ID: 22227520 | Reference-DOI: 10.1038/EMBOJ.2011.472

Molecule 1 - HEAT SHOCK PROTEIN STI1
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21 DE3 CODON PLUS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PET28
	Fragment	:	TPR REPEATS 4-9, RESIDUES 262-515
	Gene	:	STI1, YOR027W, OR26.17
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	559292
	Strain	:	ATCC 204508 / S288C

Molecule 2 - HEAT SHOCK PROTEIN
	Chains	:	B, C
	Engineered	:	YES
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	559292
	Other Details	:	THIS SEQUENCE OCCURS NATURALLY IN YEAST - C-TERMINUS OF HSP90.
	Synthetic	:	YES

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3UQ3)

(no "Site" information available for 3UQ3)

(no "SS Bond" information available for 3UQ3)

(no "Cis Peptide Bond" information available for 3UQ3)

(no "SAP(SNP)/Variant" information available for 3UQ3)

Asymmetric/Biological Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TPR	PS50005	TPR repeat profile.	STI1_YEAST	5-38 40-73 74-107 262-295 336-369 396-429 430-463	4	- - - A:262-295 A:336-369 A:396-429 A:430-463
2	TPR_REGION	PS50293	TPR repeat region circular profile.	STI1_YEAST	5-107 262-295 362-497 295-363	3	- A:262-295 A:362-497 A:295-363

Asymmetric/Biological Unit (1, 2)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000371646	1a	ENSE00001361028	chr6:44214824-44214932	109	HS90B_HUMAN	-	0	0	-	-
1.3b	ENST00000371646	3b	ENSE00002201694	chr6:44216367-44216513	147	HS90B_HUMAN	1-49	49	0	-	-
1.4b	ENST00000371646	4b	ENSE00002189486	chr6:44217114-44217320	207	HS90B_HUMAN	50-118	69	0	-	-
1.5a	ENST00000371646	5a	ENSE00002183060	chr6:44217412-44217571	160	HS90B_HUMAN	119-172	54	0	-	-
1.6	ENST00000371646	6	ENSE00002150570	chr6:44217758-44217891	134	HS90B_HUMAN	172-216	45	0	-	-
1.7	ENST00000371646	7	ENSE00002189784	chr6:44218028-44218336	309	HS90B_HUMAN	217-319	103	0	-	-
1.8	ENST00000371646	8	ENSE00002147387	chr6:44218785-44218950	166	HS90B_HUMAN	320-375	56	0	-	-
1.9	ENST00000371646	9	ENSE00001140344	chr6:44219155-44219345	191	HS90B_HUMAN	375-438	64	0	-	-
1.10	ENST00000371646	10	ENSE00001140336	chr6:44219474-44219621	148	HS90B_HUMAN	439-488	50	0	-	-
1.11d	ENST00000371646	11d	ENSE00000974672	chr6:44219736-44220004	269	HS90B_HUMAN	488-577	90	0	-	-
1.12	ENST00000371646	12	ENSE00000974673	chr6:44220782-44221115	334	HS90B_HUMAN	578-689	112	0	-	-
1.13a	ENST00000371646	13a	ENSE00001427294	chr6:44221226-44221620	395	HS90B_HUMAN	689-724	36	2	B:706-710 C:708-710	5 3

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:258
 aligned with STI1_YEAST | P15705 from UniProtKB/Swiss-Prot  Length:589

    Alignment length:312
                                   213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513  
           STI1_YEAST   204 SNSMPKEPETSKSTEQKKDAEPQSDSTTSKENSSKAPQKEESKESEPMEVDEDDSKIEADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 515
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhh------------------------------------------------------hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------TPR_REGION  PDB: A:262-295        ------------------------------------------------------------------TPR_REGION  PDB: A:362-497 UniProt: 362-497                                                                                             ------------------ PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------TPR_REGION  PDB: A:295-363 UniProt: 295-363                          --------------------------------TPR  PDB: A:396-429               TPR  PDB: A:430-463               ---------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------TPR  PDB: A:262-295               ----------------------------------------TPR  PDB: A:336-369               -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3uq3 A 258 GGSM------------------------------------------------------ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 515
                               |     -         -         -         -         -       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513  
                             261                                                    262

Chain B from PDB  Type:PROTEIN  Length:5
 aligned with HS90B_HUMAN | P08238 from UniProtKB/Swiss-Prot  Length:724

    Alignment length:5
          HS90B_HUMAN   720 MEEVD 724
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
               Transcript 1 1.13a Transcript 1
                 3uq3 B 706 MEEVD 710

Chain C from PDB  Type:PROTEIN  Length:3
 aligned with HS90B_HUMAN | P08238 from UniProtKB/Swiss-Prot  Length:724

    Alignment length:3
          HS90B_HUMAN   722 EVD 724
               SCOP domains --- SCOP domains
               CATH domains --- CATH domains
               Pfam domains --- Pfam domains
         Sec.struct. author ... Sec.struct. author
                 SAPs(SNPs) --- SAPs(SNPs)
                    PROSITE --- PROSITE
               Transcript 1 1.1 Transcript 1
                 3uq3 C 708 EVD 710

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3UQ3)

(no "CATH Domain" information available for 3UQ3)

(no "Pfam Domain" information available for 3UQ3)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (STI1_YEAST | P15705)

molecular function
	GO:0042030	ATPase inhibitor activity	Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of ATP to ADP and orthophosphate.
	GO:0030544	Hsp70 protein binding	Interacting selectively and non-covalently with Hsp70 proteins, any of a group of heat shock proteins around 70kDa in size.
	GO:0051879	Hsp90 protein binding	Interacting selectively and non-covalently with Hsp90 proteins, any of a group of heat shock proteins around 90kDa in size.
	GO:0003729	mRNA binding	Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0043086	negative regulation of catalytic activity	Any process that stops or reduces the activity of an enzyme.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0008104	protein localization	Any process in which a protein is transported to, or maintained in, a specific location.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain B,C (HS90B_HUMAN | P08238)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0002135	CTP binding	Interacting selectively and non-covalently with CTP, cytidine 5'-triphosphate.
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0023026	MHC class II protein complex binding	Interacting selectively and non-covalently with the class II major histocompatibility complex.
	GO:0030911	TPR domain binding	Interacting selectively and non-covalently with a tetratricopeptide repeat (TPR) domain of a protein, the consensus sequence of which is defined by a pattern of small and large hydrophobic amino acids and a structure composed of helices.
	GO:0002134	UTP binding	Interacting selectively and non-covalently with UTP, uridine 5'-triphosphate.
	GO:0032564	dATP binding	Interacting selectively and non-covalently with dATP, deoxyadenosine triphosphate.
	GO:0003725	double-stranded RNA binding	Interacting selectively and non-covalently with double-stranded RNA.
	GO:0042826	histone deacetylase binding	Interacting selectively and non-covalently with the enzyme histone deacetylase.
	GO:0044325	ion channel binding	Interacting selectively and non-covalently with one or more specific sites on an ion channel, a protein complex that spans a membrane and forms a water-filled channel across the phospholipid bilayer allowing selective ion transport down its electrochemical gradient.
	GO:0019900	kinase binding	Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
	GO:0030235	nitric-oxide synthase regulator activity	Modulates the activity of nitric oxide synthase.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0019901	protein kinase binding	Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
	GO:0019887	protein kinase regulator activity	Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein.
	GO:0017098	sulfonylurea receptor binding	Interacting selectively and non-covalently with the sulfonylurea receptor, a regulatory subunit of the ATP-sensitive potassium ion channel.
	GO:0051082	unfolded protein binding	Interacting selectively and non-covalently with an unfolded protein.
biological process
	GO:0038096	Fc-gamma receptor signaling pathway involved in phagocytosis	An Fc-gamma receptor signaling pathway that contributes to the endocytic engulfment of external particulate material by phagocytes.
	GO:0071353	cellular response to interleukin-4	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-4 stimulus.
	GO:0071407	cellular response to organic cyclic compound	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0043524	negative regulation of neuron apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.
	GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	Any process that stops, prevents, or reduces the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
	GO:0001890	placenta development	The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin.
	GO:0045793	positive regulation of cell size	Any process that increases cell size.
	GO:0045429	positive regulation of nitric oxide biosynthetic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.
	GO:0032092	positive regulation of protein binding	Any process that activates or increases the frequency, rate or extent of protein binding.
	GO:0033160	positive regulation of protein import into nucleus, translocation	Any process that activates or increases the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane.
	GO:0071902	positive regulation of protein serine/threonine kinase activity	Any process that increases the rate, frequency, or extent of protein serine/threonine kinase activity.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0050821	protein stabilization	Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
	GO:1900034	regulation of cellular response to heat	Any process that modulates the frequency, rate or extent of cellular response to heat.
	GO:0060334	regulation of interferon-gamma-mediated signaling pathway	Any process that modulates the rate, frequency or extent of the series of molecular events generated as a consequence of interferon-gamma binding to a cell surface receptor.
	GO:0031396	regulation of protein ubiquitination	Any process that modulates the frequency, rate or extent of the addition of ubiquitin groups to a protein.
	GO:0060338	regulation of type I interferon-mediated signaling pathway	Any process that modulates the rate, frequency or extent of a type I interferon-mediated signaling pathway. A type I interferon-mediated signaling pathway is the series of molecular events generated as a consequence of a type I interferon binding to a cell surface receptor.
	GO:0010033	response to organic substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.
	GO:0009651	response to salt stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
	GO:0006950	response to stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
	GO:0006986	response to unfolded protein	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
	GO:0097435	supramolecular fiber organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a supramolecular fiber, a polymer consisting of an indefinite number of protein or protein complex subunits that have polymerised to form a fiber-shaped structure.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0008180	COP9 signalosome	A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
	GO:0016324	apical plasma membrane	The region of the plasma membrane located at the apical end of the cell.
	GO:0016323	basolateral plasma membrane	The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
	GO:0031526	brush border membrane	The portion of the plasma membrane surrounding the brush border.
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016234	inclusion body	A discrete intracellular part formed of aggregated molecules such as proteins or other biopolymers.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0042470	melanosome	A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.

Asymmetric/Biological Unit
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	3uq3
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	STI1_YEAST \| P15705
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UniProtKB/Swiss-Prot
	HS90B_HUMAN \| P08238	:	1qz2 1uym 2l6j 3fwv 3nmq 3pry 5fwk 5fwl 5fwm 5fwp
	STI1_YEAST \| P15705	:	2llv 2llw 3upv

1elr	STRUCTURE OF TPR DOMAIN-PEPTIDE COMPLEXES: CRITICAL ELEMENTS IN THE ASSEMBLY OF THE HSP70-HSP90 MULTICHAPERONE MACHINE
3esk	ELECTROSTATIC INTERACTIONS OF HSP-ORGANIZING PROTEIN TETRATRICOPEPTIDE DOMAINS WITH HSP70 AND HSP90: COMPUTATIONAL ANALYSIS AND PROTEIN ENGINEERING
3upv

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Ligands, Modified Residues, Ions (0, 0)

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Exons (1, 2)

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