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(-) Description

Title :  PICHIA STIPITIS OYE2.6 COMPLEXED WITH NICOTINAMIDE
 
Authors :  Y. A. Pompeu, J. D. Stewart
Date :  18 Nov 11  (Deposition) - 11 Jul 12  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oye, Old Yellow Enzyme, Fmn, Oxidoreductase, Alkene Reductase, Assymetric Alkene Reduction, Oye1 Homologue, Tim Barrel, Nadph Oxidoreductase, Nad(P)H (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. A. Pompeu, B. Sullivan, A. Z. Walton, J. D. Stewart
Structural And Catalytic Characterization Of Pichia Stipiti Oye 2. 6, A Useful Biocatalyst For Asymmetric Alkene Reductions
Adv. Synth. Catal. 2012
PubMed: search  |  Reference-DOI: 10.1002/ADSC.201200213

(-) Compounds

Molecule 1 - OLD YELLOW ENZYME 2.6 (OYE2.6), NADPH DEHYDROGENASE
    Chains: A
    EC Number: 1.6.99.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-22B
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: OYE2.6, PICST_44614
    Organism Common: YEAST
    Organism Scientific: SCHEFFERSOMYCES STIPITIS
    Organism Taxid: 322104
    Strain: ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric Unit (4, 9)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
2MLA3Ligand/IonMALONIC ACID
3NA4Ligand/IonSODIUM ION
4NCA1Ligand/IonNICOTINAMIDE
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
2MLA6Ligand/IonMALONIC ACID
3NA-1Ligand/IonSODIUM ION
4NCA2Ligand/IonNICOTINAMIDE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:33 , THR A:34 , THR A:35 , ALA A:68 , GLN A:111 , HIS A:188 , HIS A:191 , ARG A:240 , GLY A:292 , GLY A:320 , ASN A:321 , PHE A:345 , SER A:346 , ARG A:347 , PHE A:373 , TYR A:374 , NCA A:412 , HOH A:497 , HOH A:537 , HOH A:541 , HOH A:561BINDING SITE FOR RESIDUE FMN A 408
2AC2SOFTWARETYR A:78 , GLU A:79 , GLY A:80 , HOH A:429 , HOH A:684 , HOH A:859BINDING SITE FOR RESIDUE MLA A 409
3AC3SOFTWAREHIS A:43 , SER A:76 , TYR A:78 , VAL A:123 , ARG A:127 , HOH A:431 , HOH A:670 , HOH A:731 , HOH A:809BINDING SITE FOR RESIDUE MLA A 410
4AC4SOFTWARELYS A:10 , ASN A:354 , TRP A:357 , ARG A:360 , HOH A:455 , HOH A:711BINDING SITE FOR RESIDUE MLA A 411
5AC5SOFTWAREILE A:113 , HIS A:188 , HIS A:191 , TYR A:193 , FMN A:408 , HOH A:749BINDING SITE FOR RESIDUE NCA A 412
6AC6SOFTWAREHOH A:417 , HOH A:421 , HOH A:755 , HOH A:791BINDING SITE FOR RESIDUE NA A 413
7AC7SOFTWAREHIS A:191 , ASP A:196 , SER A:242 , ALA A:245 , HOH A:501 , HOH A:505BINDING SITE FOR RESIDUE NA A 414
8AC8SOFTWAREGLN A:26 , ASN A:104 , HOH A:747 , HOH A:816BINDING SITE FOR RESIDUE NA A 415
9AC9SOFTWAREASP A:335 , ASP A:338 , THR A:341 , HOH A:752 , HOH A:802BINDING SITE FOR RESIDUE NA A 416

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UPW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:326 -Pro A:327

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UPW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UPW)

(-) Exons   (0, 0)

(no "Exon" information available for 3UPW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:404
 aligned with A3LT82_PICST | A3LT82 from UniProtKB/TrEMBL  Length:407

    Alignment length:404
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401    
         A3LT82_PICST     2 SSVKISPLKDSEAFQSIKVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYETYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFYSDNNYGYNTFSMDSEEVDKELEIKRVPSAIE 405
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhh.eee..eee...eee..............hhhhhhhhhhh......eee...ee.hhhhh..........hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhh....ee......hhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.....eeeee...ee..ee.hhhhh...hhhhhhhh..eeeee.hhhhhh..hhhhhhhhh...eeee.hhhhhhh.hhhhhhhhh......hhhhh........hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3upw A   2 SSVKISPLKDSEAFQSIKVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFYSDNNYGYNTFSMDSEEVDKELEIKRVPSAIE 405
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3UPW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UPW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UPW)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (A3LT82_PICST | A3LT82)
molecular function
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A3LT82_PICST | A3LT82: 3tjl 4df2 4m5p 4qai

(-) Related Entries Specified in the PDB File

1oya
3tjl SAME ENZYME COMPLEXED WITH MALONIC ACID
4df2