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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN MS6760 FROM MYCOBACTERIUM SMEGMATIS
 
Authors :  R. A. Bajaj, L. Miallau, D. Cascio, M. Arbing, D. Eisenberg, Tb Structu Genomics Consortium (Tbsgc)
Date :  04 Nov 11  (Deposition) - 23 Nov 11  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.57
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Uncharacterized Protein, Srpbcc Superfamily, Beta Sandwich, Unknown Function, Structural Genomics, Tb Structural Genomics Consortium, Tbsgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Bajaj, M. A. Arbing, A. Shin, D. Cascio, L. Miallau
Crystal Structure Of The Toxin Msmeg_6760, The Structural Homolog Of Mycobacterium Tuberculosis Rv2035, A Novel Type Ii Toxin Involved In The Hypoxic Response.
Acta Crystallogr F Struct V. 72 863 2016 Biol Commun
PubMed-ID: 27917833  |  Reference-DOI: 10.1107/S2053230X16017957

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAPLE3 (PET 28 DERIVATIVE)
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MSMEG_6760
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 246196
    Strain: MC2-155

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3UID)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:85 -Pro A:86
2Glu B:85 -Pro B:86

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UID)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:163
 aligned with A0R731_MYCS2 | A0R731 from UniProtKB/TrEMBL  Length:161

    Alignment length:163
                                                                                                                                                                                         161   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         A0R731_MYCS2     2 PVTDVKHDLDTLTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEKYAGYWEITAVDEPHSFSFLDGFADEDFNPNTDLPVSTNVYTFTEHDGGTRATYVGTYASAEALQQVLDMGVIEGASSAINQIDALLTA---   -
               SCOP domains d3uida_ A: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeee......eeeeeee.....eeeeeeeeeeee...eeeeeeeee............eeeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uid A   2 PVTDVKHDLDTLTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEKYAGYWEITAVDEPHSFSFLDGFADEDFNPNTDLPVSTNVYTFTEHDGGTRATYVGTYASAEALQQVLDMGVIEGASSAINQIDALLTATHH 164
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   


Chain B from PDB  Type:PROTEIN  Length:157
 aligned with A0R731_MYCS2 | A0R731 from UniProtKB/TrEMBL  Length:161

    Alignment length:162
                                                                                                                                                                                         161  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161  
         A0R731_MYCS2     2 PVTDVKHDLDTLTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEKYAGYWEITAVDEPHSFSFLDGFADEDFNPNTDLPVSTNVYTFTEHDGGTRATYVGTYASAEALQQVLDMGVIEGASSAINQIDALLTA--   -
               SCOP domains d3uidb_ B: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee....eeeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeee......eeeeeee.....eeeeeeeeeeee...eeeeeeeee......-----.eeeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3uid B   2 PVTDVKHDLDTLTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEKYAGYWEITAVDEPHSFSFLDGFADEDFNP-----VSTNVYTFTEHDGGTRATYVGTYASAEALQQVLDMGVIEGASSAINQIDALLTATH 163
                                    11        21        31        41        51        61        71        81        91       101|     |111       121       131       141       151       161  
                                                                                                                              102   108
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UID)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UID)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (A0R731_MYCS2 | A0R731)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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    Glu A:85 - Pro A:86   [ RasMol ]  
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