3UG7 - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF GET3 FROM METHANOCALDOCOCCUS JANNASCHII

Authors :   C. J. M. Suloway, M. E. Rome, W. M. Clemons Jr.

Date :   02 Nov 11 (Deposition) - 07 Dec 11 (Release) - 15 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (2x)
Biol. Unit 2: B,C  (2x)

Keywords :   Tail-Anchored, Membrane Protein, Targeting Factor, Atp-Binding, Get3, Trc40, Atpase, Arsa, Nucleotide-Binding, Protein Targeting, Protein Transport, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. J. Suloway, M. E. Rome, W. M. Clemons
Tail-Anchor Targeting By A Get3 Tetramer: The Structure Of An Archaeal Homologue.
Embo J. V. 31 707 2012
PubMed-ID: 22124326 | Reference-DOI: 10.1038/EMBOJ.2011.433

Molecule 1 - ARSENICAL PUMP-DRIVING ATPASE
	Chains	:	A, B, C, D
	EC Number	:	3.6.3.16
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET33B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	MJ1142
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII
	Organism Taxid	:	243232
	Strain	:	ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440
	Synonym	:	ATPASE GET3, ARSENICAL RESISTANCE ATPASE, ARSENITE- TRANSLOCATING ATPASE, ARSENITE-TRANSPORTING ATPASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (2x)	:	A			D
Biological Unit 2 (2x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	ADP	4	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	ADP	4	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	ADP	4	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:35 , GLY A:36 , GLY A:38 , LYS A:39 , THR A:40 , THR A:41 , ASN A:274 , GLN A:275 , VAL A:312 , PRO A:313 , LEU A:315 , ALA A:319 , MG A:403	BINDING SITE FOR RESIDUE ADP A 401
02	AC2	SOFTWARE	THR A:40 , ASP A:158 , ADP A:401	BINDING SITE FOR RESIDUE MG A 403
03	AC3	SOFTWARE	CYS A:283 , CYS A:286	BINDING SITE FOR RESIDUE ZN A 404
04	AC4	SOFTWARE	GLY B:36 , GLY B:38 , LYS B:39 , THR B:40 , THR B:41 , ASN B:274 , GLN B:275 , VAL B:312 , PRO B:313 , LEU B:314 , LEU B:315 , ALA B:319 , MG B:403	BINDING SITE FOR RESIDUE ADP B 401
05	AC5	SOFTWARE	THR B:40 , ASP B:63 , ADP B:401	BINDING SITE FOR RESIDUE MG B 403
06	AC6	SOFTWARE	CYS B:283 , CYS B:286	BINDING SITE FOR RESIDUE ZN B 404
07	AC7	SOFTWARE	GLY C:36 , GLY C:38 , LYS C:39 , THR C:40 , THR C:41 , ASN C:274 , GLN C:275 , PRO C:313 , LEU C:315 , ALA C:319 , MG C:403	BINDING SITE FOR RESIDUE ADP C 401
08	AC8	SOFTWARE	THR C:40 , ASP C:63 , ADP C:401	BINDING SITE FOR RESIDUE MG C 403
09	AC9	SOFTWARE	CYS C:283 , CYS C:286	BINDING SITE FOR RESIDUE ZN C 404
10	BC1	SOFTWARE	GLY D:35 , GLY D:36 , GLY D:38 , LYS D:39 , THR D:40 , THR D:41 , ASN D:274 , GLN D:275 , PRO D:313 , LEU D:314 , LEU D:315 , GLU D:318 , ALA D:319 , MG D:403	BINDING SITE FOR RESIDUE ADP D 401
11	BC2	SOFTWARE	THR D:40 , ASP D:63 , ADP D:401	BINDING SITE FOR RESIDUE MG D 403
12	BC3	SOFTWARE	CYS D:283 , CYS D:286	BINDING SITE FOR RESIDUE ZN D 404

(no "SS Bond" information available for 3UG7)

Asymmetric Unit

No.	Residues
1	Pro A:201	-	Phe A:202
2	Pro B:201	-	Phe B:202
3	Glu D:113	-	Asn D:114
4	Pro D:201	-	Phe D:202

(no "SAP(SNP)/Variant" information available for 3UG7)

(no "PROSITE Motif" information available for 3UG7)

(no "Exon" information available for 3UG7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:317
 aligned with ARSA_METJA | Q58542 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:324
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329    
           ARSA_METJA    10 NSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhh.......ee......eeeee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-------.hhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ug7 A  10 NSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPF-------DYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199  |      -|      219       229       239       249       259       269       279       289       299       309       319       329    
                                                                                                                                                                                                                          202     210

Chain B from PDB  Type:PROTEIN  Length:303
 aligned with ARSA_METJA | Q58542 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:310
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333
           ARSA_METJA    24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhh.......ee......eeeee.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-------.hhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ug7 B  24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPF-------DYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193        |-      |213       223       233       243       253       263       273       283       293       303       313       323       333
                                                                                                                                                                                                            202     210

Chain C from PDB  Type:PROTEIN  Length:301
 aligned with ARSA_METJA | Q58542 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:308
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325        
           ARSA_METJA    26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhh.......ee......eeeee.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-------.hhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ug7 C  26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPF-------DYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      |  -    |  215       225       235       245       255       265       275       285       295       305       315       325        
                                                                                                                                                                                                          202     210

Chain D from PDB  Type:PROTEIN  Length:301
 aligned with ARSA_METJA | Q58542 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:308
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325        
           ARSA_METJA    26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhh.......ee......eeeee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-------.hhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ug7 D  26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPF-------DYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      |  -    |  215       225       235       245       255       265       275       285       295       305       315       325        
                                                                                                                                                                                                          202     210

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3UG7)

(no "CATH Domain" information available for 3UG7)

(no "Pfam Domain" information available for 3UG7)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ARSA_METJA | Q58542)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016887	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
	GO:0015446	ATPase-coupled arsenite transmembrane transporter activity	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + arsenite(in) = ADP + phosphate + arsenite(out).
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0098656	anion transmembrane transport	A process in which an anion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
	GO:0098655	cation transmembrane transport	A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
	GO:0046685	response to arsenic-containing substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Glu D:113 - Asn D:114	[ RasMol ]
		Pro A:201 - Phe A:202	[ RasMol ]
		Pro B:201 - Phe B:202	[ RasMol ]
		Pro D:201 - Phe D:202	[ RasMol ]

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Access by PDB/NDB ID
	3ug7
		Family and Domain Information	:	ProDom \| SYSTERS
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Access by UniProt ID/Accession number
	ARSA_METJA \| Q58542
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	3.6.3.16
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	ARSA_METJA \| Q58542
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	ARSA_METJA \| Q58542	:	3ug6

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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