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(-) Description

Title :  THE ABSENCE OF TERTIARY INTERACTIONS IN A SELF-ASSEMBLED DNA CRYSTAL STRUCTURE
 
Authors :  N. Nguyen, J. J. Birktoft, R. Sha, T. Wang, J. Zheng, P. E. Constantinou, S. L. Ginell, Y. Chen, C. Mao, N. C. Seeman
Date :  24 Oct 11  (Deposition) - 16 May 12  (Release) - 16 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  6.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (3x)
Keywords :  Nanotechnology, Dna Crossover, Designed Crystal Lattice, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Nguyen, J. J. Birktoft, R. Sha, T. Wang, J. Zheng, P. E. Constantinou S. L. Ginell, Y. Chen, C. Mao, N. C. Seeman
The Absence Of Tertiary Interactions In A Self-Assembled Dn Crystal Structure.
J. Mol. Recognit. V. 25 234 2012
PubMed-ID: 22434713  |  Reference-DOI: 10.1002/JMR.2183
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*CP*GP*TP*AP*CP*TP*CP*G)- 3')
    Chains: A
    Engineered: YES
    Fragment: THE 16 RESIDUES IS FROM OF THE FIRST PART OF A DNA MOLECULE USED IN EXPERIMENT, SEE REMARK 400 FOR DETAILS.
    Synthetic: YES
 
Molecule 2 - DNA (5'- D(P*CP*CP*GP*AP*GP*TP*AP*CP*GP*AP*CP*GP*AP*CP*AP*AP*G)-3')
    Chains: D
    Engineered: YES
    Fragment: SYMMETRICALLY- AND SEQUENTIALLY REPEATING UNIT OF A CIRCULAR DNA MOLECULES, SEE REMARK 400 FOR DETAILS.
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*AP*GP*GP*CP*TP*GP*C)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 4 - DNA (5'-D(P*GP*CP*TP*TP*GP*TP*CP*GP*TP*TP*CP*AP*TP*CP*A)- 3')
    Chains: C
    Engineered: YES
    Fragment: THE 15 RESIDUES IS FROM OF THE LAST PART OF A DNA MOLECULE USED IN EXPERIMENT, SEE REMARK 400 FOR DETAILS.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x): ABCD

Summary Information (see also Sequences/Alignments below)

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Chain A from PDB  Type:DNA  Length:16
                                               
                  3ubi A  1 GAGCAGCCCGTACTCG 16
                                    10      


Chain B from PDB  Type:DNA  Length:14
                                             
                  3ubi B  1 TCTGATGAGGCTGC 14
                                    10    


Chain C from PDB  Type:DNA  Length:15
                                              
                  3ubi C 17 GCTTGTCGTTCATCA 31
                                    26     


Chain D from PDB  Type:DNA  Length:17
                                                
                  3ubi D  1 CCGAGTACGACGACAAG 17
                                    10
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