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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-LOBE DOMAIN OF LACTOFERRIN BINDING PROTEIN B (LBPB) OF MORAXELLA BOVIS
 
Authors :  E Arutyunova, C. L. Brooks, A Beddeck, M. W. Mak, A. B. Schryvers, M. J.
Date :  21 Oct 11  (Deposition) - 28 Mar 12  (Release) - 30 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.93
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Keywords :  Beta Barrel, Lipoprotein, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Arutyunova, C. L. Brooks, A. Beddek, M. W. Mak, A. B. Schryvers, M. J. Lemieux
Crystal Structure Of The N-Lobe Of Lactoferrin Binding Protein B From Moraxella Bovis(1).
Biochem. Cell Biol. V. 90 351 2012
PubMed-ID: 22332934  |  Reference-DOI: 10.1139/O11-078

(-) Compounds

Molecule 1 - LBPB B-LOBE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LBPB
    Organism Scientific: MORAXELLA BOVIS
    Organism Taxid: 476

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A 
Biological Unit 3 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3UAQ)

(-) Sites  (0, 0)

(no "Site" information available for 3UAQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UAQ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:129 -Leu A:130
2Gly B:129 -Leu B:130

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UAQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UAQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3UAQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:276
 aligned with H9KVH9_MORBO | H9KVH9 from UniProtKB/TrEMBL  Length:341

    Alignment length:289
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332         
         H9KVH9_MORBO    53 PVLGSVLAIPKRNQAYDKKKLTHLEEHVPLDENNITTAHTNPLPALTKELQERYEGGKIYQSDDKYKFVKAGWIFTGLRPDETIKTDEDTDQPKQYTKGDGYLYYYGDNPTTGLAKGVANYTGHWDFVTDVKRERESTITETTGRQAFGGGSGYKMDSGFGDEVGATSFAEQVFGQYAPRQGNHRAVFKADFDAKKLTGTLSTKQKAIASSPETYVDRYDIDATIKGNRFAGSAIAKNTKSSFLEPNFFNKNADNRLEGGFYGENAEELAGKFLTNDNSVFAVFAGKQD 341
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..................ee..hhhhhee....hhhhhhhhhhhhh.....ee.......eeeeeeee......eeee.......eeee..eeeeeeee....-----.eeeeeeeeeeee.ee.....--------.....................hhhhh............eeeeeeee....eeeeeeeeee........eeeeeeeeeeeee..eeeeeeee................eeeeeeeeee.....eeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3uaq A  53 PVLGSVLAIPKRNQAYDKKKLTHLEEHVPLDENNITTAHTNPLPALTKELQERYEGGKIYQSDDKYKFVKAGWIFTGLRPDETIKTDEDTDQPKQYTKGDGYLYYYGDNPT-----GVANYTGHWDFVTDVKRERES--------QAFGGGSGYKMDSGFGDEVGATSFAEQVFGQYAPRQGNHRAVFKADFDAKKLTGTLSTKQKAIASSPETYVDRYDIDATIKGNRFAGSAIAKNTKSSFLEPNFFNKNADNRLEGGFYGENAEELAGKFLTNDNSVFAVFAGKQD 341
                                    62        72        82        92       102       112       122       132       142       152       162|     |172       182      |  -     | 202       212       222       232       242       252       262       272       282       292       302       312       322       332         
                                                                                                                                        163   169                 189      198                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:273
 aligned with H9KVH9_MORBO | H9KVH9 from UniProtKB/TrEMBL  Length:341

    Alignment length:288
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333        
         H9KVH9_MORBO    54 VLGSVLAIPKRNQAYDKKKLTHLEEHVPLDENNITTAHTNPLPALTKELQERYEGGKIYQSDDKYKFVKAGWIFTGLRPDETIKTDEDTDQPKQYTKGDGYLYYYGDNPTTGLAKGVANYTGHWDFVTDVKRERESTITETTGRQAFGGGSGYKMDSGFGDEVGATSFAEQVFGQYAPRQGNHRAVFKADFDAKKLTGTLSTKQKAIASSPETYVDRYDIDATIKGNRFAGSAIAKNTKSSFLEPNFFNKNADNRLEGGFYGENAEELAGKFLTNDNSVFAVFAGKQD 341
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..................ee.......ee....hhhhhhhhhhhhh.....ee.......eeeeeeee......eeee.......eeee..eeeeeeee....-----.eeeeeeeeeeee.ee....----------....................hhhhh............eeeeeeee....eeeeeeeeee........eeeeeeeeeeeee..eeeeeeee................eeeeeeeeee.....eeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3uaq B  54 VLGSVLAIPKRNQAYDKKKLTHLEEHVPLDENNITTAHTNPLPALTKELQERYEGGKIYQSDDKYKFVKAGWIFTGLRPDETIKTDEDTDQPKQYTKGDGYLYYYGDNPT-----GVANYTGHWDFVTDVKRERE----------AFGGGSGYKMDSGFGDEVGATSFAEQVFGQYAPRQGNHRAVFKADFDAKKLTGTLSTKQKAIASSPETYVDRYDIDATIKGNRFAGSAIAKNTKSSFLEPNFFNKNADNRLEGGFYGENAEELAGKFLTNDNSVFAVFAGKQD 341
                                    63        73        83        93       103       113       123       133       143       153       163     | 173       183    |    -     | 203       213       223       233       243       253       263       273       283       293       303       313       323       333        
                                                                                                                                       163   169                188        199
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3UAQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UAQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UAQ)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (H9KVH9_MORBO | H9KVH9)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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    Gly A:129 - Leu A:130   [ RasMol ]  
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