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(-) Description

Title :  CRYSTAL STRUCTURE OF ESCHERICHIA COLI DMSD IN SPACE GROUP P212121
 
Authors :  C. M. Stevens, M. Paetzel
Date :  06 Oct 11  (Deposition) - 06 Feb 13  (Release) - 06 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Tord-Like Dmsd, Chaperone Translocation Tord-Like Tat, Predmsa, Cytosol, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  

PubMed: search

(-) Compounds

Molecule 1 - TWIN-ARGININE LEADER-BINDING PROTEIN DMSD
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: B1591, DMSD, JW5262, YNFI
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 49)

Asymmetric Unit (5, 49)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2GOL42Ligand/IonGLYCEROL
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO41Ligand/IonSULFATE ION
5TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL6Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO41Ligand/IonSULFATE ION
5TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL5Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO4-1Ligand/IonSULFATE ION
5TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 3 (2, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO4-1Ligand/IonSULFATE ION
5TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 4 (2, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL9Ligand/IonGLYCEROL
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO4-1Ligand/IonSULFATE ION
5TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 5 (1, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO4-1Ligand/IonSULFATE ION
5TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 6 (1, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL5Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO4-1Ligand/IonSULFATE ION
5TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO4-1Ligand/IonSULFATE ION
5TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO4-1Ligand/IonSULFATE ION
5TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (49, 49)

Asymmetric Unit (49, 49)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:7 , ASP A:8BINDING SITE FOR RESIDUE GOL A 301
02AC2SOFTWAREPHE A:156 , PRO A:157 , TRP A:158 , THR A:160 , ARG A:161BINDING SITE FOR RESIDUE GOL A 302
03AC3SOFTWAREGLU A:171 , ARG A:176 , ILE H:167 , GLU H:168BINDING SITE FOR RESIDUE GOL A 303
04AC4SOFTWARETYR A:22 , TYR A:23 , PHE A:117 , GLU A:118 , MET A:119 , LYS A:120 , SER A:130BINDING SITE FOR RESIDUE GOL A 304
05AC5SOFTWARETYR A:22 , GLU A:123 , HIS A:127 , TRS B:306BINDING SITE FOR RESIDUE GOL A 305
06AC6SOFTWARETRP A:87 , VAL A:90 , SER A:96 , HOH A:413 , HOH A:423 , HOH B:424BINDING SITE FOR RESIDUE GOL A 306
07AC7SOFTWARELEU A:48 , PRO A:49 , GLU A:50BINDING SITE FOR RESIDUE SO4 A 307
08AC8SOFTWAREPRO B:47 , LEU B:48 , PRO B:49 , GOL B:302BINDING SITE FOR RESIDUE GOL B 301
09AC9SOFTWAREGLU B:50 , GOL B:301 , HOH B:442BINDING SITE FOR RESIDUE GOL B 302
10BC1SOFTWARETYR B:22 , PHE B:76 , LYS B:120 , GLU B:123 , HIS B:127 , HOH B:440BINDING SITE FOR RESIDUE GOL B 303
11BC2SOFTWAREGLU B:26 , THR B:67 , GLN B:70 , HOH B:445BINDING SITE FOR RESIDUE GOL B 304
12BC3SOFTWAREHOH A:463 , TYR B:22 , TYR B:23 , GLU B:118 , MET B:119 , SER B:130BINDING SITE FOR RESIDUE GOL B 305
13BC4SOFTWAREGLU A:123 , GOL A:305 , ARG B:15 , GLU B:140 , HOH B:421 , HOH B:424 , HOH B:427 , HOH B:435BINDING SITE FOR RESIDUE TRS B 306
14BC5SOFTWAREPHE C:99 , ASN C:122 , GLU C:123 , PRO C:124 , TRS C:309 , HOH C:412 , TRP D:137 , GOL D:308BINDING SITE FOR RESIDUE GOL C 301
15BC6SOFTWAREARG C:161BINDING SITE FOR RESIDUE GOL C 302
16BC7SOFTWARETRP C:153BINDING SITE FOR RESIDUE GOL C 303
17BC8SOFTWAREARG C:107BINDING SITE FOR RESIDUE GOL C 304
18BC9SOFTWARETHR C:2 , HIS C:3 , PHE C:4 , GLU C:148 , GLN C:192 , LEU C:194BINDING SITE FOR RESIDUE GOL C 305
19CC1SOFTWAREARG C:15 , GLU C:140 , HOH C:406 , HOH C:481BINDING SITE FOR RESIDUE GOL C 306
20CC2SOFTWAREGLY C:142 , ARG C:143 , GLN C:144 , THR C:145 , GLU C:146BINDING SITE FOR RESIDUE GOL C 307
21CC3SOFTWARESER C:5 , GLN C:6 , GLN C:7 , ASP C:8 , ASN C:9 , PHE C:10 , SER C:11 , HOH C:472BINDING SITE FOR RESIDUE GOL C 308
22CC4SOFTWARETYR C:22 , PHE C:76 , GLU C:123 , GOL C:301BINDING SITE FOR RESIDUE TRS C 309
23CC5SOFTWAREASP C:8BINDING SITE FOR RESIDUE CL C 310
24CC6SOFTWAREASN C:122 , TYR D:22 , TYR D:23 , GLU D:118 , MET D:119 , SER D:130 , LEU D:133 , HOH D:469BINDING SITE FOR RESIDUE GOL D 301
25CC7SOFTWAREPRO D:49 , GLU D:50BINDING SITE FOR RESIDUE GOL D 302
26CC8SOFTWAREGLU A:140 , GLU D:123 , HOH D:401BINDING SITE FOR RESIDUE GOL D 303
27CC9SOFTWAREVAL C:199 , PRO C:201 , THR D:160 , ASP D:164 , ARG D:183BINDING SITE FOR RESIDUE GOL D 304
28DC1SOFTWARETYR D:22 , TRP D:72 , GLU D:123 , HOH D:404BINDING SITE FOR RESIDUE GOL D 305
29DC2SOFTWAREGLU D:171BINDING SITE FOR RESIDUE GOL D 306
30DC3SOFTWARELEU D:104 , ARG D:107 , GLN D:108BINDING SITE FOR RESIDUE GOL D 307
31DC4SOFTWAREGOL C:301 , ARG D:15 , GLU D:140 , HOH D:436BINDING SITE FOR RESIDUE GOL D 308
32DC5SOFTWAREGLU A:140 , LEU D:82 , PRO D:85 , HOH D:413 , HOH D:444BINDING SITE FOR RESIDUE GOL D 309
33DC6SOFTWAREGLN D:7 , ASP D:8 , ASN D:9 , HOH D:437BINDING SITE FOR RESIDUE PEG D 310
34DC7SOFTWAREGLU E:140 , HOH E:425BINDING SITE FOR RESIDUE GOL E 301
35DC8SOFTWARESER C:52 , LEU C:184 , PRO E:55 , ALA E:59 , ARG E:176 , ALA E:177 , GLU E:180 , HOH E:427BINDING SITE FOR RESIDUE GOL E 302
36DC9SOFTWARETYR E:22 , TYR E:23 , PHE E:117 , GLU E:118 , MET E:119 , LYS E:120 , LEU E:133 , GOL E:304BINDING SITE FOR RESIDUE GOL E 303
37EC1SOFTWARETYR E:22 , TRP E:87 , MET E:119 , GLU E:123 , PRO E:124 , HIS E:127 , SER E:130 , GOL E:303 , GOL E:307BINDING SITE FOR RESIDUE GOL E 304
38EC2SOFTWAREGLN E:7 , ASP E:8BINDING SITE FOR RESIDUE GOL E 305
39EC3SOFTWAREPRO E:49 , HOH E:429BINDING SITE FOR RESIDUE GOL E 306
40EC4SOFTWARETYR E:22 , TRP E:72 , TRP E:87 , GLU E:123 , HIS E:127 , GOL E:304BINDING SITE FOR RESIDUE GOL E 307
41EC5SOFTWARELEU E:82 , TRP E:87 , HOH E:418 , GOL F:305BINDING SITE FOR RESIDUE GOL E 308
42EC6SOFTWAREALA F:24 , PRO F:25 , GLU F:26 , ALA F:69 , TRP F:72 , GLN F:73BINDING SITE FOR RESIDUE GOL F 301
43EC7SOFTWARETYR F:22 , GLU F:123 , HIS F:127BINDING SITE FOR RESIDUE GOL F 302
44EC8SOFTWAREASN E:122 , TYR F:22 , TYR F:23 , PHE F:117 , GLU F:118 , MET F:119 , SER F:130BINDING SITE FOR RESIDUE GOL F 303
45EC9SOFTWARETRP F:87 , LEU F:98 , GLU F:123 , ARG H:15 , GLU H:140BINDING SITE FOR RESIDUE GOL F 304
46FC1SOFTWAREASN E:122 , GLU E:123 , GOL E:308 , GLU F:140 , HOH F:413 , HOH F:432BINDING SITE FOR RESIDUE GOL F 305
47FC2SOFTWAREGLU F:50BINDING SITE FOR RESIDUE CL F 306
48FC3SOFTWAREASP F:8BINDING SITE FOR RESIDUE CL F 307
49FC4SOFTWARESER H:27 , ALA H:28BINDING SITE FOR RESIDUE GOL H 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U41)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:78 -Pro A:79
2Gly B:78 -Pro B:79
3Gly C:78 -Pro C:79
4Gly D:78 -Pro D:79
5Gly E:78 -Pro E:79
6Gly F:78 -Pro F:79
7Gly G:78 -Pro G:79
8Gly H:78 -Pro H:79

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3U41)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U41)

(-) Exons   (0, 0)

(no "Exon" information available for 3U41)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
 aligned with DMSD_ECOLI | P69853 from UniProtKB/Swiss-Prot  Length:204

    Alignment length:204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    
           DMSD_ECOLI     1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
               SCOP domains d3u41a_ A: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhhhhhhhhhh......hhhhhhhhh..hhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhh..........hhhhhh......hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u41 A   1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    


Chain B from PDB  Type:PROTEIN  Length:204
 aligned with DMSD_ECOLI | P69853 from UniProtKB/Swiss-Prot  Length:204

    Alignment length:204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    
           DMSD_ECOLI     1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
               SCOP domains d3u41b_ B: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhhhhhhhhhh......hhhhhhhhh..hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhh..........hhhhhh......hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u41 B   1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    


Chain C from PDB  Type:PROTEIN  Length:204
 aligned with DMSD_ECOLI | P69853 from UniProtKB/Swiss-Prot  Length:204

    Alignment length:204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    
           DMSD_ECOLI     1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
               SCOP domains d3u41c_ C: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhhhhhhhhhh......hhhhhhhhh..hhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhh..........hhhhhh......hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u41 C   1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    


Chain D from PDB  Type:PROTEIN  Length:204
 aligned with DMSD_ECOLI | P69853 from UniProtKB/Swiss-Prot  Length:204

    Alignment length:204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    
           DMSD_ECOLI     1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
               SCOP domains d3u41d_ D: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhhhhhhhhhh......hhhhhhhhh..hhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhh.........hhhhhhh......hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u41 D   1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    


Chain E from PDB  Type:PROTEIN  Length:204
 aligned with DMSD_ECOLI | P69853 from UniProtKB/Swiss-Prot  Length:204

    Alignment length:204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    
           DMSD_ECOLI     1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
               SCOP domains d3u41e_ E: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhhhhhhhhhh......hhhhhhhhh..hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhh.........hhhhhhh......hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u41 E   1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    


Chain F from PDB  Type:PROTEIN  Length:204
 aligned with DMSD_ECOLI | P69853 from UniProtKB/Swiss-Prot  Length:204

    Alignment length:204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    
           DMSD_ECOLI     1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
               SCOP domains d3u41f_ F: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhhhhhhhhhh......hhhhhhhhh..hhhhhh..hhhhhhhhhhhh......hhhhhhhhhhh.........hhhhhhh......hhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3u41 F   1 MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    


Chain G from PDB  Type:PROTEIN  Length:203
 aligned with DMSD_ECOLI | P69853 from UniProtKB/Swiss-Prot  Length:204

    Alignment length:203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   
           DMSD_ECOLI     2 THFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
               SCOP domains d3u41g_ G: automated matches                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.hhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhh....hhhhhhhhhhh.........hhhhhhh......hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u41 G   2 THFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   


Chain H from PDB  Type:PROTEIN  Length:203
 aligned with DMSD_ECOLI | P69853 from UniProtKB/Swiss-Prot  Length:204

    Alignment length:203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   
           DMSD_ECOLI     2 THFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
               SCOP domains d3u41h_ H: automated matches                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.hhhhhhhhhhhhhhh......hhhhhhhhh..hhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhh..........hhhhhh......hhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3u41 H   2 THFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR 204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U41)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U41)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (DMSD_ECOLI | P69853)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005048    signal sequence binding    Interacting selectively and non-covalently with a signal sequence, a specific peptide sequence found on protein precursors or mature proteins that dictates where the mature protein is localized.
biological process
    GO:0061077    chaperone-mediated protein folding    The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031234    extrinsic component of cytoplasmic side of plasma membrane    The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its cytoplasmic surface, but not integrated into the hydrophobic region.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DMSD_ECOLI | P69853: 3cw0 3efp

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3U41)