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Title :   CRYSTAL STRUCTURE OF 3-KETOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (FABG)(Y155F) FROM VIBRIO CHOLERAE

Authors :   J. Hou, M. Chruszcz, H. Zheng, M. Grabowski, M. Domagalski, W. F. Anders W. Minor, Center For Structural Genomics Of Infectious Diseas (Csgid)

Date :   27 Sep 11 (Deposition) - 19 Oct 11 (Release) - 03 Feb 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.45

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x),B (1x),C (1x),D (1x)

Keywords :   Vibrio Cholerae, 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase, Fabg, Oxidoreductase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Hou, H. Zheng, M. Chruszcz, M. D. Zimmerman, I. A. Shumilin, T. Osinski, M. Demas, S. Grimshaw, W. Minor
Dissecting The Structural Elements For The Activation Of Beta-Ketoacyl-(Acyl Carrier Protein) Reductase From Vibrio Cholerae.
J. Bacteriol. V. 198 463 2015
PubMed-ID: 26553852 | Reference-DOI: 10.1128/JB.00360-15

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.100
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21-CODONPLUS(DE3)-RIPL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	VC2021, VCD_002346
	Mutation	:	YES
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	593588
	Strain	:	MJ-1236

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 11)

No.	Name	Count	Type	Full Name
1	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2	SO4	10	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 7)

No.	Name	Count	Type	Full Name
1	NAP	-1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2	SO4	7	Ligand/Ion	SULFATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:16 , SER A:18 , ARG A:19 , ALA A:40 , THR A:41 , LEU A:62 , ASN A:63 , VAL A:64 , GLY A:92 , ILE A:93 , THR A:94 , THR A:113	BINDING SITE FOR RESIDUE NAP A 249
02	AC2	SOFTWARE	SER A:2 , PHE A:4 , ARG A:32 , SER B:2 , ARG B:32	BINDING SITE FOR RESIDUE SO4 A 250
03	AC3	SOFTWARE	ARG A:19 , GLY A:20 , LYS D:23	BINDING SITE FOR RESIDUE SO4 A 251
04	AC4	SOFTWARE	GLY A:83 , GLY D:82 , GLY D:83 , LYS D:132	BINDING SITE FOR RESIDUE SO4 A 252
05	AC5	SOFTWARE	ARG B:19 , GLY B:20 , LYS B:23 , LYS C:23 , SO4 C:251	BINDING SITE FOR RESIDUE SO4 C 249
06	AC6	SOFTWARE	GLY B:83 , LYS B:132 , GLY C:83 , LYS C:132 , HOH C:286	BINDING SITE FOR RESIDUE SO4 C 250
07	AC7	SOFTWARE	LYS B:23 , ARG C:19 , GLY C:20 , LYS C:23 , SO4 C:249 , HOH C:267	BINDING SITE FOR RESIDUE SO4 C 251
08	AC8	SOFTWARE	LYS A:23 , ARG D:19 , GLY D:20 , LYS D:23	BINDING SITE FOR RESIDUE SO4 D 249
09	AC9	SOFTWARE	SER C:2 , ARG C:32 , HOH C:258 , MET D:1 , SER D:2 , ARG D:32	BINDING SITE FOR RESIDUE SO4 D 250
10	BC1	SOFTWARE	GLY D:16 , SER D:18 , THR D:39 , ALA D:40 , THR D:41 , HOH D:271	BINDING SITE FOR RESIDUE SO4 D 251

(no "SS Bond" information available for 3TZC)

(no "Cis Peptide Bond" information available for 3TZC)

(no "SAP(SNP)/Variant" information available for 3TZC)

(no "PROSITE Motif" information available for 3TZC)

(no "Exon" information available for 3TZC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains d3tzca_ A: automated matches                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tzc A   2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMY 246
                                    11        21        31        41        51        61        71        81        91   ||  105       115       125       135       157       167       177       187    || 202       212       222       232       242    
                                                                                                                        95|                                         144|                                192|                                                
                                                                                                                        100                                          157                                 198

Chain B from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains d3tzcb_ B: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee......hhhhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tzc B   2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGANFAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMY 246
                                    11        21        31        41        51        61        71        81        91|      116       126       136       153       163       173       183       193|      208       218       228       238        
                                                                                                                    91|                                   145|                                     193|                                               
                                                                                                                    107                                    153                                      199

Chain C from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains d3tzcc_ C: automated matches                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhh...eeeeeeee........hhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3tzc C   2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMY 246
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       158       168       178       188   ||  204       214       224       234       244  
                                                                                                                                                                    140|                               192|                                               
                                                                                                                                                                     158                                199

Chain D from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains d3tzcd_ D: automated matches                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhh...eeeeeeee..........hhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3tzc D   1 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVANFAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMY 246
                                    10        20        30        40        50        60        70        80        90||     114       124       134       144|      162       172       182       192 ||    204       214       224       234       244  
                                                                                                                     91|                                   144|                                      194|                                                 
                                                                                                                     106                                    153                                       197

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: automated matches (114)

Vibrio cholerae [TaxId: 593588] (3)

1a	d3tzca_	A:
1b	d3tzcb_	B:
1c	d3tzcc_	C:
1d	d3tzcd_	D:

(no "CATH Domain" information available for 3TZC)

(no "Pfam Domain" information available for 3TZC)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3TZC)

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Biological Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 11)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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