3TSZ - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PDZ3-SH3-GUK CORE MODULE FROM HUMAN ZO-1 IN COMPLEX WITH 12MER PEPTIDE FROM HUMAN JAM-A CYTOPLASMIC TAIL

Authors :   J. Nomme, A. Lavie

Date :   13 Sep 11 (Deposition) - 12 Oct 11 (Release) - 28 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B

Keywords :   Pdz3-Sh3-Guk, Scaffolding, Jam, Tight Junction, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Nomme, A. S. Fanning, M. Caffrey, M. F. Lye, J. M. Anderson, A. Lavie
The Src Homology 3 Domain Is Required For Junctional Adhesion Molecule Binding To The Third Pdz Domain Of The Scaffolding Protein Zo-1.
J. Biol. Chem. V. 286 43352 2011
PubMed-ID: 22030391 | Reference-DOI: 10.1074/JBC.M111.304089

Molecule 1 - TIGHT JUNCTION PROTEIN ZO-1
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET14B
	Expression System Strain	:	BL21(C41)
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	PDZ3-SH3-GUK (UNP RESIDUES 417-803)
	Gene	:	TJP1, ZO1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TIGHT JUNCTION PROTEIN 1, ZONA OCCLUDENS PROTEIN 1, ZONULA OCCLUDENS PROTEIN 1

Molecule 2 - JUNCTIONAL ADHESION MOLECULE A
	Chains	:	B
	Engineered	:	YES
	Fragment	:	JAM-A_P12 (UNP RESIDUES 288-299)
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	SYNTHETIC PEPTIDE
	Synonym	:	JAM-A, JUNCTIONAL ADHESION MOLECULE 1, JAM-1, PLATELET F11 RECEPTOR, PLATELET ADHESION MOLECULE 1, PAM-1
	Synthetic	:	YES

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3TSZ)

(no "Site" information available for 3TSZ)

(no "SS Bond" information available for 3TSZ)

(no "Cis Peptide Bond" information available for 3TSZ)

Asymmetric/Biological Unit (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_025153	N	471	S	ZO1_HUMAN	Polymorphism	2229517	A	N	471	S
2	UniProt	VAR_025154	I	790	V	ZO1_HUMAN	Polymorphism	7179270	A	I	790	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	ZO1_HUMAN	23-110 186-264 421-502	1	- - A:421-502
2	SH3	PS50002	Src homology 3 (SH3) domain profile.	ZO1_HUMAN	516-584	1	A:516-584

Asymmetric/Biological Unit (9, 9)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2c	ENST00000346128	2c	ENSE00001822067	chr15:30114682-30114205	478	ZO1_HUMAN	1-9	9	0	-	-
1.5a	ENST00000346128	5a	ENSE00001658526	chr15:30092905-30092849	57	ZO1_HUMAN	10-28	19	0	-	-
1.7	ENST00000346128	7	ENSE00001419179	chr15:30065560-30065436	125	ZO1_HUMAN	29-70	42	0	-	-
1.8	ENST00000346128	8	ENSE00001144945	chr15:30064369-30064267	103	ZO1_HUMAN	70-104	35	0	-	-
1.9	ENST00000346128	9	ENSE00000673044	chr15:30058745-30058469	277	ZO1_HUMAN	105-197	93	0	-	-
1.10	ENST00000346128	10	ENSE00001001849	chr15:30054641-30054538	104	ZO1_HUMAN	197-231	35	0	-	-
1.11	ENST00000346128	11	ENSE00000673042	chr15:30053972-30053804	169	ZO1_HUMAN	232-288	57	0	-	-
1.12	ENST00000346128	12	ENSE00001001840	chr15:30053489-30053342	148	ZO1_HUMAN	288-337	50	0	-	-
1.14b	ENST00000346128	14b	ENSE00001001852	chr15:30034985-30034846	140	ZO1_HUMAN	337-384	48	0	-	-
1.15a	ENST00000346128	15a	ENSE00001493913	chr15:30033640-30033535	106	ZO1_HUMAN	384-419	36	0	-	-
1.16	ENST00000346128	16	ENSE00001001854	chr15:30029618-30029468	151	ZO1_HUMAN	419-469	51	1	A:421-469	49
1.17	ENST00000346128	17	ENSE00000672950	chr15:30026586-30026478	109	ZO1_HUMAN	470-506	37	1	A:470-506	37
1.18	ENST00000346128	18	ENSE00000912744	chr15:30025517-30025298	220	ZO1_HUMAN	506-579	74	1	A:506-579	74
1.19b	ENST00000346128	19b	ENSE00000912743	chr15:30025019-30024835	185	ZO1_HUMAN	579-641	63	1	A:579-641 (gaps)	63
1.20a	ENST00000346128	20a	ENSE00001001836	chr15:30024732-30024637	96	ZO1_HUMAN	641-673	33	1	A:641-673	33
1.21	ENST00000346128	21	ENSE00000912740	chr15:30020223-30020141	83	ZO1_HUMAN	673-700	28	1	A:673-700 (gaps)	28
1.22	ENST00000346128	22	ENSE00000912739	chr15:30019195-30018985	211	ZO1_HUMAN	701-771	71	1	A:701-771	71
1.23	ENST00000346128	23	ENSE00000912738	chr15:30018683-30018583	101	ZO1_HUMAN	771-804	34	1	A:771-802	32
1.24	ENST00000346128	24	ENSE00000672942	chr15:30012912-30012562	351	ZO1_HUMAN	805-921	117	0	-	-
1.25	ENST00000346128	25	ENSE00000672941	chr15:30012220-30011981	240	ZO1_HUMAN	922-1001	80	0	-	-
1.26	ENST00000346128	26	ENSE00000672940	chr15:30011342-30010470	873	ZO1_HUMAN	1002-1292	291	0	-	-
1.27	ENST00000346128	27	ENSE00000672939	chr15:30010322-30010225	98	ZO1_HUMAN	1293-1325	33	0	-	-
1.28	ENST00000346128	28	ENSE00001001846	chr15:30009042-30008815	228	ZO1_HUMAN	1325-1401	77	0	-	-
1.29	ENST00000346128	29	ENSE00001001851	chr15:30003204-30003035	170	ZO1_HUMAN	1401-1458	58	0	-	-
1.30	ENST00000346128	30	ENSE00001001837	chr15:30001240-30000763	478	ZO1_HUMAN	1458-1617	160	0	-	-
1.31	ENST00000346128	31	ENSE00001001845	chr15:29997949-29997732	218	ZO1_HUMAN	1617-1690	74	0	-	-
1.32a	ENST00000346128	32a	ENSE00001001860	chr15:29996509-29996426	84	ZO1_HUMAN	1690-1718	29	0	-	-
1.33b	ENST00000346128	33b	ENSE00001541183	chr15:29993893-29991571	2323	ZO1_HUMAN	1718-1748	31	0	-	-

2.4a	ENST00000368026	4a	ENSE00001850047	chr1:160990968-160990800	169	JAM1_HUMAN	1-22	22	0	-	-
2.5	ENST00000368026	5	ENSE00001040888	chr1:160971143-160971075	69	JAM1_HUMAN	22-45	24	0	-	-
2.6c	ENST00000368026	6c	ENSE00001040905	chr1:160970917-160970810	108	JAM1_HUMAN	45-81	37	0	-	-
2.7	ENST00000368026	7	ENSE00001040911	chr1:160970567-160970421	147	JAM1_HUMAN	81-130	50	0	-	-
2.8	ENST00000368026	8	ENSE00001040909	chr1:160970138-160969936	203	JAM1_HUMAN	130-197	68	0	-	-
2.9b	ENST00000368026	9b	ENSE00001040904	chr1:160969768-160969666	103	JAM1_HUMAN	198-232	35	0	-	-
2.10	ENST00000368026	10	ENSE00001040895	chr1:160969537-160969430	108	JAM1_HUMAN	232-268	37	0	-	-
2.11	ENST00000368026	11	ENSE00001797141	chr1:160969198-160969186	13	JAM1_HUMAN	268-272	5	0	-	-
2.12	ENST00000368026	12	ENSE00001040891	chr1:160968881-160968833	49	JAM1_HUMAN	272-288	17	0	-	-
2.13d	ENST00000368026	13d	ENSE00001353809	chr1:160968696-160965001	3696	JAM1_HUMAN	289-299	11	1	B:418-427	10

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:341
 aligned with ZO1_HUMAN | Q07157 from UniProtKB/Swiss-Prot  Length:1748

    Alignment length:382
                                   430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800  
            ZO1_HUMAN   421 SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSE 802
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eeeeee...eeeeeee...hhhhhh.....eeeeee..ee....hhhhhhhhhhhh....eeeeeeeehhhhhhhhh.......eeeee..................eeeeee.hhhhh..eeeeeee.hhh.eeeeeeeehhhhhhhhhh...---------------------------------------.....eeeeeeee......eeee..hhhhhhhhhhhhh...eee.............--...hhhhhhhhhh...eeee..hhhhhhhhhhh....eeeeee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhhheeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------ SAPs(SNPs)
                    PROSITE PDZ  PDB: A:421-502 UniProt: 421-502                                              -------------SH3  PDB: A:516-584 UniProt: 516-584                                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.16  PDB: A:421-469 UniProt: 419-469       Exon 1.17  PDB: A:470-506            ------------------------------------------------------------------------Exon 1.19b  PDB: A:579-641 (gaps) UniProt: 579-641             -------------------------------Exon 1.21 UniProt: 673-700  Exon 1.22  PDB: A:701-771 UniProt: 701-771                             ------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.18  PDB: A:506-579 UniProt: 506-579                                -------------------------------------------------------------Exon 1.20a  PDB: A:641-673       -------------------------------------------------------------------------------------------------Exon 1.23  PDB: A:771-802        Transcript 1 (2)
                 3tsz A 421 SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQY---------------------------------------TKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQR--GIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSE 802
                                   430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       | -         -         -         -       630       640       650       660       670       680   |  |690       700       710       720       730       740       750       760       770       780       790       800  
                                                                                                                                                                                                 588                                     628                                                     684  |                                                                                                                   
                                                                                                                                                                                                                                                                                                    687

Chain B from PDB  Type:PROTEIN  Length:10
 aligned with JAM1_HUMAN | Q9Y624 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:10
                                   299
           JAM1_HUMAN   290 EFKQTSSFLV 299
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
               Transcript 2 Exon 2.13d Transcript 2
                 3tsz B 418 EFKQTSSFLV 427
                                   427

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3TSZ)

(no "CATH Domain" information available for 3TSZ)

(no "Pfam Domain" information available for 3TSZ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ZO1_HUMAN | Q07157)

molecular function
	GO:0005516	calmodulin binding	Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0019904	protein domain specific binding	Interacting selectively and non-covalently with a specific domain of a protein.
biological process
	GO:0001825	blastocyst formation	The initial formation of a blastocyst from a solid ball of cells known as a morula.
	GO:0007043	cell-cell junction assembly	The aggregation, arrangement and bonding together of a set of components to form a junction between cells.
	GO:1901350	cell-cell signaling involved in cell-cell junction organization	Any cell-cell signaling that is involved in cell-cell junction organization.
	GO:0090557	establishment of endothelial intestinal barrier	The establishment of a barrier between endothelial cell layers of the intestine to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition.
	GO:0035329	hippo signaling	The series of molecular signals mediated by the serine/threonine kinase Hippo or one of its orthologs. In Drosophila, Hippo in complex with the scaffold protein Salvador (Sav), phosphorylates and activates Warts (Wts), which in turn phosphorylates and inactivates the Yorkie (Yki) transcriptional activator. The core fly components hippo, sav, wts and mats are conserved in mammals as STK4/3 (MST1/2), SAV1/WW45, LATS1/2 and MOB1.
	GO:0007605	sensory perception of sound	The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
cellular component
	GO:0005912	adherens junction	A cell junction at which anchoring proteins (cadherins or integrins) extend through the plasma membrane and are attached to actin filaments.
	GO:0043296	apical junction complex	A functional unit located near the cell apex at the points of contact between epithelial cells, which in vertebrates is composed of the tight junction, the zonula adherens, and desmosomes and in some invertebrates, such as Drosophila, is composed of the subapical complex (SAC), the zonula adherens and the septate junction. Functions in the regulation of cell polarity, tissue integrity and intercellular adhesion and permeability.
	GO:0045177	apical part of cell	The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue.
	GO:0016324	apical plasma membrane	The region of the plasma membrane located at the apical end of the cell.
	GO:0016327	apicolateral plasma membrane	The apical end of the lateral plasma membrane of epithelial cells.
	GO:0016323	basolateral plasma membrane	The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
	GO:0005923	bicellular tight junction	An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes.
	GO:0030054	cell junction	A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
	GO:0005913	cell-cell adherens junction	An adherens junction which connects a cell to another cell.
	GO:0005911	cell-cell junction	A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005921	gap junction	A cell-cell junction composed of pannexins or innexins and connexins, two different families of channel-forming proteins.
	GO:0014704	intercalated disc	A complex cell-cell junction at which myofibrils terminate in cardiomyocytes; mediates mechanical and electrochemical integration between individual cardiomyocytes. The intercalated disc contains regions of tight mechanical attachment (fasciae adherentes and desmosomes) and electrical coupling (gap junctions) between adjacent cells.
	GO:0046581	intercellular canaliculus	An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B (JAM1_HUMAN | Q9Y624)

molecular function
	GO:0030165	PDZ domain binding	Interacting selectively and non-covalently with a PDZ domain of a protein, a domain found in diverse signaling proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0001618	virus receptor activity	Combining with a virus component and mediating entry of the virus into the cell.
biological process
	GO:0031032	actomyosin structure organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin or paramyosin. The myosin may be organized into filaments.
	GO:0070830	bicellular tight junction assembly	The aggregation, arrangement and bonding together of a set of components to form a tight junction, an occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet.
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0030154	cell differentiation	The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
	GO:0030855	epithelial cell differentiation	The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
	GO:0090557	establishment of endothelial intestinal barrier	The establishment of a barrier between endothelial cell layers of the intestine to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition.
	GO:0090002	establishment of protein localization to plasma membrane	The directed movement of a protein to a specific location in the plasma membrane.
	GO:0030198	extracellular matrix organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
	GO:0006954	inflammatory response	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
	GO:0050892	intestinal absorption	Any process in which nutrients are taken up from the contents of the intestine.
	GO:0050900	leukocyte migration	The movement of a leukocyte within or between different tissues and organs of the body.
	GO:0034260	negative regulation of GTPase activity	Any process that stops or reduces the rate of GTP hydrolysis by a GTPase.
	GO:0043547	positive regulation of GTPase activity	Any process that activates or increases the activity of a GTPase.
	GO:0045777	positive regulation of blood pressure	Any process in which the force of blood traveling through the circulatory system is increased.
	GO:2000249	regulation of actin cytoskeleton reorganization	Any process that modulates the frequency, rate or extent of actin cytoskeleton reorganization.
	GO:0001817	regulation of cytokine production	Any process that modulates the frequency, rate, or extent of production of a cytokine.
	GO:0090559	regulation of membrane permeability	Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by a membrane.
	GO:0009314	response to radiation	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
	GO:0007179	transforming growth factor beta receptor signaling pathway	A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0005923	bicellular tight junction	An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes.
	GO:0030054	cell junction	A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
	GO:0005911	cell-cell junction	A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
	GO:0031410	cytoplasmic vesicle	A vesicle found in the cytoplasm of a cell.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0015630	microtubule cytoskeleton	The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0036057	slit diaphragm	A specialized cell-cell junction found between the interdigitating foot processes of the glomerular epithelium (the podocytes) in the vertebrate kidney, which is adapted for facilitating glomerular filtration.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3tsz)

	Sites
(no "Sites" information available for 3tsz)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3tsz)

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3tsz
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	JAM1_HUMAN \| Q9Y624
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	ZO1_HUMAN \| Q07157
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	JAM1_HUMAN \| Q9Y624
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	ZO1_HUMAN \| Q07157
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 2)

PROSITE Motifs (2, 2)

Exons (9, 9)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (54, 61)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File