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(-) Description

Title :  2.2 ANGSTROM CRYSTAL STRUCTURE OF SHIKIMATE 5-DEHYDROGENASE FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH NAD.
 
Authors :  G. Minasov, S. H. Light, A. Halavaty, L. Shuvalova, L. Papazisi, W. F. An Center For Structural Genomics Of Infectious Diseases (Csgi
Date :  06 Sep 11  (Deposition) - 21 Sep 11  (Release) - 21 Sep 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Nad(P)-Binding Rossmann-Fold Domain, Shikimate 5- Dehydrogenase, Nad, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Minasov, S. H. Light, A. Halavaty, L. Shuvalova, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 2 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase From Listeria Monocytogenes In Complex With Nad.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SHIKIMATE DEHYDROGENASE
    ChainsA, B, C, D, E, F, G, H
    EC Number1.1.1.25
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21 MAGIC
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentSHIKIMATE 5-DEHYDROGENASE
    GeneAROE, LMO0490
    Organism ScientificLISTERIA MONOCYTOGENES
    Organism Taxid169963
    StrainEGD-E

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)AB      
Biological Unit 2 (1x)  CD    
Biological Unit 3 (1x)    EF  
Biological Unit 4 (1x)      GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2NAD8Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO48Ligand/IonSULFATE ION
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO45Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO41Ligand/IonSULFATE ION
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO42Ligand/IonSULFATE ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:137 , ALA A:138 , GLY A:139 , GLY A:140 , ALA A:141 , ASN A:161 , ARG A:162 , ASP A:164 , PHE A:166 , THR A:210 , GLY A:211 , VAL A:212 , MET A:214 , PHE A:217 , LEU A:222 , VAL A:238 , TYR A:240 , GLY A:261 , MET A:264 , MET A:265 , GLN A:268 , HOH A:296 , HOH A:603 , HOH A:705 , HOH A:953BINDING SITE FOR RESIDUE NAD A 292
02AC2SOFTWAREMET A:74 , PRO A:75 , ASN A:76 , LYS A:77 , THR A:78BINDING SITE FOR RESIDUE SO4 A 293
03AC3SOFTWARESER A:73 , MET A:74 , LYS A:77 , ASN A:98 , GLN A:268BINDING SITE FOR RESIDUE SO4 A 294
04AC4SOFTWAREGLY B:137 , ALA B:138 , GLY B:139 , GLY B:140 , ALA B:141 , ASN B:161 , ARG B:162 , ASP B:164 , PHE B:166 , THR B:210 , GLY B:211 , VAL B:212 , MET B:214 , PHE B:217 , VAL B:238 , TYR B:240 , GLY B:261 , MET B:264 , MET B:265 , HOH B:304 , HOH B:329BINDING SITE FOR RESIDUE NAD B 292
05AC5SOFTWARESER B:73 , MET B:74 , LYS B:77 , ASN B:98 , GLN B:268BINDING SITE FOR RESIDUE SO4 B 293
06AC6SOFTWAREMET B:74 , PRO B:75 , ASN B:76 , LYS B:77 , THR B:78BINDING SITE FOR RESIDUE SO4 B 294
07AC7SOFTWAREPRO B:242 , THR B:243BINDING SITE FOR RESIDUE SO4 B 295
08AC8SOFTWAREASP C:113 , GLY C:137 , ALA C:138 , GLY C:139 , GLY C:140 , ALA C:141 , ASN C:161 , ARG C:162 , ASP C:164 , PHE C:166 , THR C:210 , GLY C:211 , VAL C:212 , MET C:214 , PHE C:217 , LEU C:222 , VAL C:238 , TYR C:240 , GLY C:261 , MET C:264 , MET C:265 , GLN C:268 , HOH C:303 , HOH C:305 , HOH C:323 , HOH C:811 , HOH C:812 , HOH C:965 , HOH C:1009BINDING SITE FOR RESIDUE NAD C 292
09AC9SOFTWAREHOH C:1019BINDING SITE FOR RESIDUE CL C 293
10BC1SOFTWAREMET C:74 , LYS C:77BINDING SITE FOR RESIDUE CL C 294
11BC2SOFTWAREGLY D:137 , ALA D:138 , GLY D:139 , GLY D:140 , ALA D:141 , ASN D:161 , ARG D:162 , ASP D:164 , PHE D:166 , THR D:210 , GLY D:211 , MET D:214 , PHE D:217 , VAL D:238 , GLY D:261 , MET D:264 , MET D:265 , GLN D:268 , HOH D:493 , HOH D:676 , HOH D:819 , HOH D:820BINDING SITE FOR RESIDUE NAD D 292
12BC3SOFTWAREGLY E:137 , ALA E:138 , GLY E:139 , GLY E:140 , ALA E:141 , ASN E:161 , ARG E:162 , ASP E:164 , PHE E:166 , THR E:210 , GLY E:211 , VAL E:212 , MET E:214 , PHE E:217 , LEU E:222 , VAL E:238 , TYR E:240 , GLY E:261 , MET E:264 , MET E:265 , HOH E:294 , HOH E:393 , HOH E:555 , HOH E:837 , HOH E:842 , HOH E:1010BINDING SITE FOR RESIDUE NAD E 292
13BC4SOFTWAREPRO E:231 , GLU E:232BINDING SITE FOR RESIDUE CL E 293
14BC5SOFTWAREGLY F:137 , ALA F:138 , GLY F:139 , GLY F:140 , ALA F:141 , ASN F:161 , ARG F:162 , ASP F:164 , PHE F:166 , THR F:210 , GLY F:211 , VAL F:212 , MET F:214 , PHE F:217 , VAL F:238 , TYR F:240 , GLY F:261 , MET F:264 , MET F:265 , GLN F:268 , HOH F:306 , HOH F:615 , HOH F:657 , HOH F:673 , HOH F:858BINDING SITE FOR RESIDUE NAD F 292
15BC6SOFTWAREMET F:74 , PRO F:75 , ASN F:76 , LYS F:77 , THR F:78 , HOH F:859BINDING SITE FOR RESIDUE SO4 F 293
16BC7SOFTWAREGLY G:137 , ALA G:138 , GLY G:139 , GLY G:140 , ALA G:141 , ASN G:161 , ARG G:162 , ASP G:164 , THR G:210 , GLY G:211 , VAL G:212 , MET G:214 , PHE G:217 , LEU G:222 , VAL G:238 , TYR G:240 , GLY G:261 , MET G:264 , MET G:265 , GLN G:268 , HOH G:312 , HOH G:423 , HOH G:887BINDING SITE FOR RESIDUE NAD G 292
17BC8SOFTWAREMET G:74 , PRO G:75 , ASN G:76 , LYS G:77 , THR G:78BINDING SITE FOR RESIDUE SO4 G 293
18BC9SOFTWAREGLY H:137 , ALA H:138 , GLY H:139 , GLY H:140 , ALA H:141 , ASN H:161 , ARG H:162 , ASP H:164 , PHE H:166 , THR H:210 , GLY H:211 , VAL H:212 , MET H:214 , PHE H:217 , VAL H:238 , VAL H:239 , GLY H:261 , MET H:264 , MET H:265 , HOH H:311 , HOH H:342 , HOH H:905BINDING SITE FOR RESIDUE NAD H 292
19CC1SOFTWARELYS H:131 , LYS H:132 , HOH H:1015BINDING SITE FOR RESIDUE CL H 293
20CC2SOFTWAREPRO H:242 , THR H:243BINDING SITE FOR RESIDUE SO4 H 294

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TOZ)

(-) Cis Peptide Bonds  (32, 32)

Asymmetric Unit
No.Residues
1Thr A:21 -Pro A:22
2Met A:74 -Pro A:75
3Lys A:215 -Pro A:216
4Lys A:241 -Pro A:242
5Thr B:21 -Pro B:22
6Met B:74 -Pro B:75
7Lys B:215 -Pro B:216
8Lys B:241 -Pro B:242
9Thr C:21 -Pro C:22
10Met C:74 -Pro C:75
11Lys C:215 -Pro C:216
12Lys C:241 -Pro C:242
13Thr D:21 -Pro D:22
14Met D:74 -Pro D:75
15Lys D:215 -Pro D:216
16Lys D:241 -Pro D:242
17Thr E:21 -Pro E:22
18Met E:74 -Pro E:75
19Lys E:215 -Pro E:216
20Lys E:241 -Pro E:242
21Thr F:21 -Pro F:22
22Met F:74 -Pro F:75
23Lys F:215 -Pro F:216
24Lys F:241 -Pro F:242
25Thr G:21 -Pro G:22
26Met G:74 -Pro G:75
27Lys G:215 -Pro G:216
28Lys G:241 -Pro G:242
29Thr H:21 -Pro H:22
30Met H:74 -Pro H:75
31Lys H:215 -Pro H:216
32Lys H:241 -Pro H:242

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TOZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TOZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3TOZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:291
 aligned with AROE_LISMO | Q8Y9N5 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:291
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
           AROE_LISMO     1 MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
               SCOP domains d3toza1 A:1-112 automated matches                                                                               d3toza2 A:113-291 automated matches                                                                                                                                                 SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeee......hhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhh...eeee......hhhhhh.eehhhhhhhh...eeeee..eeeee.hhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh..eeee................hhhhh....eeee.......hhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toz A   1 MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 

Chain B from PDB  Type:PROTEIN  Length:290
 aligned with AROE_LISMO | Q8Y9N5 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:290
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291
           AROE_LISMO     2 TNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
               SCOP domains d3tozb1 B:2-112 automated matches                                                                              d3tozb2 B:113-291 automated matches                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeee......hhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh...eeee......hhhhhh.eehhhhhhhh...eeeee..eeeee.hhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh..eeee................hhhhh....eeee.......hhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toz B   2 TNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain C from PDB  Type:PROTEIN  Length:287
 aligned with AROE_LISMO | Q8Y9N5 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:287
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       
           AROE_LISMO     5 ITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
               SCOP domains d3tozc1 C:5-112 automated matches                                                                           d3tozc2 C:113-291 automated matches                                                                                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee......hhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh...eeee......hhhhhh.eehhhhhhhh...eeeee..eeeee.hhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh..eeee................hhhhh....eeee.......hhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toz C   5 ITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       

Chain D from PDB  Type:PROTEIN  Length:289
 aligned with AROE_LISMO | Q8Y9N5 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:289
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282         
           AROE_LISMO     3 NKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
               SCOP domains d3tozd1 D:3-112 automated matches                                                                             d3tozd2 D:113-291 automated matches                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeee......hhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh...eeee......hhhhhh.eehhhhhhhh...eeeee..eeeee.hhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh.eeee................hhhhh....eeee.......hhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toz D   3 NKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282         

Chain E from PDB  Type:PROTEIN  Length:289
 aligned with AROE_LISMO | Q8Y9N5 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:289
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282         
           AROE_LISMO     3 NKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
               SCOP domains d3toze1 E:3-112 automated matches                                                                             d3toze2 E:113-291 automated matches                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeee......hhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh...eeee......hhhhhh.eehhhhhhhh...eeeee..eeeee.hhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh.eeee................hhhhh....eeee.......hhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toz E   3 NKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282         

Chain F from PDB  Type:PROTEIN  Length:287
 aligned with AROE_LISMO | Q8Y9N5 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:287
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       
           AROE_LISMO     5 ITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
               SCOP domains d3tozf1 F:5-112 automated matches                                                                           d3tozf2 F:113-291 automated matches                                                                                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee......hhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh...eeee......hhhhhh.eehhhhhhhh...eeeee..eeeee.hhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh.eeee................hhhhh....eeee.......hhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toz F   5 ITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       

Chain G from PDB  Type:PROTEIN  Length:291
 aligned with AROE_LISMO | Q8Y9N5 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:291
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
           AROE_LISMO     1 MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
               SCOP domains d3tozg1 G:1-112 automated matches                                                                               d3tozg2 G:113-291 automated matches                                                                                                                                                 SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeee......hhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh...eeee......hhhhhh.eehhhhhhhh...eeeee..eeeee.hhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh..eeee................hhhhh....eeee.......hhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toz G   1 MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 

Chain H from PDB  Type:PROTEIN  Length:291
 aligned with AROE_LISMO | Q8Y9N5 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:291
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
           AROE_LISMO     1 MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
               SCOP domains d3tozh1 H:1-112 automated matches                                                                               d3tozh2 H:113-291 automated matches                                                                                                                                                 SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeee......hhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhh...eeee......hhhhhh.eehhhhhhhh...eeeee..eeeee.hhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh.eeee................hhhhh....eeee.......hhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toz H   1 MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 291
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TOZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TOZ)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (AROE_LISMO | Q8Y9N5)
molecular function
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004764    shikimate 3-dehydrogenase (NADP+) activity    Catalysis of the reaction: shikimate + NADP+ = 3-dehydroshikimate + NADPH + H+.
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0009423    chorismate biosynthetic process    The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019632    shikimate metabolic process    The chemical reactions and pathways involving shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AROE_LISMO | Q8Y9N53tnl

(-) Related Entries Specified in the PDB File

3tnl 1.45 ANGSTROM CRYSTAL STRUCTURE OF SHIKIMATE 5- DEHYDROGENASE FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH SHIKIMATE AND NAD. RELATED ID: IDP91169 RELATED DB: TARGETDB