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(-) Description

Title :  HETEROCOMPLEX OF COIL 2B DOMAINS OF HUMAN INTERMEDIATE FILAMENT PROTEINS, KERATIN 5 (KRT5) AND KERATIN 14 (KRT14)
 
Authors :  C. H. Lee, M. S. Kim, D. J. Leahy, P. A. Coulombe
Date :  02 Sep 11  (Deposition) - 20 Jun 12  (Release) - 01 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Coiled-Coil, Structural Support, Cytosolic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. H. Lee, M. S. Kim, B. M. Chung, D. J. Leahy, P. A. Coulombe
Structural Basis For Heteromeric Assembly And Perinuclear Organization Of Keratin Filaments.
Nat. Struct. Mol. Biol. V. 19 707 2012
PubMed-ID: 22705788  |  Reference-DOI: 10.1038/NSMB.2330

(-) Compounds

Molecule 1 - KERATIN, TYPE I CYTOSKELETAL 14
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 295-422
    GeneKRT14
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCYTOKERATIN-14, CK-14, KERATIN-14, K14
 
Molecule 2 - KERATIN, TYPE II CYTOSKELETAL 5
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 350-477
    GeneKRT5
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym58 KDA CYTOKERATIN, CYTOKERATIN-5, CK-5, KERATIN-5, K5, TYPE-II KERATIN KB5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (2x)AB
Biological Unit 2 (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3TNU)

(-) Sites  (0, 0)

(no "Site" information available for 3TNU)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:367 -A:367

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TNU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (22, 22)

Asymmetric Unit (22, 22)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_010450I377NK1C14_HUMANDisease (WC-EBS)61536893AI377N
02UniProtVAR_003843L384PK1C14_HUMANDisease (K-EBS)59629244AL384P
03UniProtVAR_028766S387TK2C5_HUMANPolymorphism2669875BS387T
04UniProtVAR_010451R388CK1C14_HUMANDisease (WC-EBS)59966597AR388C
05UniProtVAR_031637R388HK1C14_HUMANDisease (WC-EBS)58645163AR388H
06UniProtVAR_023726K404EK2C5_HUMANDisease (WC-EBS)60809982BK404E
07UniProtVAR_023724L408MK1C14_HUMANDisease (WC-EBS)57200223AL408M
08UniProtVAR_023725A413TK1C14_HUMANDisease (K-EBS)59780231AA413T
09UniProtVAR_031638Y415CK1C14_HUMANDisease (WC-EBS)59442925AY415C
10UniProtVAR_003844Y415HK1C14_HUMANDisease (K-EBS)58380626AY415H
11UniProtVAR_031639R416PK1C14_HUMANDisease (DM-EBS)60622724AR416P
12UniProtVAR_027721R417PK1C14_HUMANDisease (DM-EBS)61085704AR417P
13UniProtVAR_026544E418KK2C5_HUMANDisease (K-EBS)121912476BE418K
14UniProtVAR_071705L418QK1C14_HUMANDisease  ---AL418Q
15UniProtVAR_003845L419QK1C14_HUMANDisease (DM-EBS)57364972AL419Q
16UniProtVAR_071633A428TK2C5_HUMANDisease (WC-EBS)267607458BA428T
17UniProtVAR_023727A438DK2C5_HUMANDisease (WC-EBS)57845028BA438D
18UniProtVAR_003876L463PK2C5_HUMANDisease (K-EBS)57599352BL463P
19UniProtVAR_010466I467TK2C5_HUMANDisease (DM-EBS)60271599BI467T
20UniProtVAR_027726T469PK2C5_HUMANDisease (DM-EBS)60596287BT469P
21UniProtVAR_003877E475GK2C5_HUMANDisease (DM-EBS)61348633BE475G
22UniProtVAR_023728E475KK2C5_HUMANDisease (DM-EBS)57155193BE475K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (22, 44)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_010450I377NK1C14_HUMANDisease (WC-EBS)61536893AI377N
02UniProtVAR_003843L384PK1C14_HUMANDisease (K-EBS)59629244AL384P
03UniProtVAR_028766S387TK2C5_HUMANPolymorphism2669875BS387T
04UniProtVAR_010451R388CK1C14_HUMANDisease (WC-EBS)59966597AR388C
05UniProtVAR_031637R388HK1C14_HUMANDisease (WC-EBS)58645163AR388H
06UniProtVAR_023726K404EK2C5_HUMANDisease (WC-EBS)60809982BK404E
07UniProtVAR_023724L408MK1C14_HUMANDisease (WC-EBS)57200223AL408M
08UniProtVAR_023725A413TK1C14_HUMANDisease (K-EBS)59780231AA413T
09UniProtVAR_031638Y415CK1C14_HUMANDisease (WC-EBS)59442925AY415C
10UniProtVAR_003844Y415HK1C14_HUMANDisease (K-EBS)58380626AY415H
11UniProtVAR_031639R416PK1C14_HUMANDisease (DM-EBS)60622724AR416P
12UniProtVAR_027721R417PK1C14_HUMANDisease (DM-EBS)61085704AR417P
13UniProtVAR_026544E418KK2C5_HUMANDisease (K-EBS)121912476BE418K
14UniProtVAR_071705L418QK1C14_HUMANDisease  ---AL418Q
15UniProtVAR_003845L419QK1C14_HUMANDisease (DM-EBS)57364972AL419Q
16UniProtVAR_071633A428TK2C5_HUMANDisease (WC-EBS)267607458BA428T
17UniProtVAR_023727A438DK2C5_HUMANDisease (WC-EBS)57845028BA438D
18UniProtVAR_003876L463PK2C5_HUMANDisease (K-EBS)57599352BL463P
19UniProtVAR_010466I467TK2C5_HUMANDisease (DM-EBS)60271599BI467T
20UniProtVAR_027726T469PK2C5_HUMANDisease (DM-EBS)60596287BT469P
21UniProtVAR_003877E475GK2C5_HUMANDisease (DM-EBS)61348633BE475G
22UniProtVAR_023728E475KK2C5_HUMANDisease (DM-EBS)57155193BE475K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (22, 22)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_010450I377NK1C14_HUMANDisease (WC-EBS)61536893AI377N
02UniProtVAR_003843L384PK1C14_HUMANDisease (K-EBS)59629244AL384P
03UniProtVAR_028766S387TK2C5_HUMANPolymorphism2669875BS387T
04UniProtVAR_010451R388CK1C14_HUMANDisease (WC-EBS)59966597AR388C
05UniProtVAR_031637R388HK1C14_HUMANDisease (WC-EBS)58645163AR388H
06UniProtVAR_023726K404EK2C5_HUMANDisease (WC-EBS)60809982BK404E
07UniProtVAR_023724L408MK1C14_HUMANDisease (WC-EBS)57200223AL408M
08UniProtVAR_023725A413TK1C14_HUMANDisease (K-EBS)59780231AA413T
09UniProtVAR_031638Y415CK1C14_HUMANDisease (WC-EBS)59442925AY415C
10UniProtVAR_003844Y415HK1C14_HUMANDisease (K-EBS)58380626AY415H
11UniProtVAR_031639R416PK1C14_HUMANDisease (DM-EBS)60622724AR416P
12UniProtVAR_027721R417PK1C14_HUMANDisease (DM-EBS)61085704AR417P
13UniProtVAR_026544E418KK2C5_HUMANDisease (K-EBS)121912476BE418K
14UniProtVAR_071705L418QK1C14_HUMANDisease  ---AL418Q
15UniProtVAR_003845L419QK1C14_HUMANDisease (DM-EBS)57364972AL419Q
16UniProtVAR_071633A428TK2C5_HUMANDisease (WC-EBS)267607458BA428T
17UniProtVAR_023727A438DK2C5_HUMANDisease (WC-EBS)57845028BA438D
18UniProtVAR_003876L463PK2C5_HUMANDisease (K-EBS)57599352BL463P
19UniProtVAR_010466I467TK2C5_HUMANDisease (DM-EBS)60271599BI467T
20UniProtVAR_027726T469PK2C5_HUMANDisease (DM-EBS)60596287BT469P
21UniProtVAR_003877E475GK2C5_HUMANDisease (DM-EBS)61348633BE475G
22UniProtVAR_023728E475KK2C5_HUMANDisease (DM-EBS)57155193BE475K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IFPS00226 Intermediate filaments signature.K1C14_HUMAN412-420  1A:412-420
K2C5_HUMAN467-475  1B:467-475
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IFPS00226 Intermediate filaments signature.K1C14_HUMAN412-420  2A:412-420
K2C5_HUMAN467-475  2B:467-475
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IFPS00226 Intermediate filaments signature.K1C14_HUMAN412-420  1A:412-420
K2C5_HUMAN467-475  1B:467-475

(-) Exons   (0, 0)

(no "Exon" information available for 3TNU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:90
 aligned with K1C14_HUMAN | P02533 from UniProtKB/Swiss-Prot  Length:472

    Alignment length:90
                                   341       351       361       371       381       391       401       411       421
          K1C14_HUMAN   332 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLEG 421
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------N------P---C-------------------M----T-CPPQQ-- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------------------------------------------------H--------------------------H------ SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------IF       - PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 3tnu A 332 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLEG 421
                                   341       351       361       371       381       391       401       411       421

Chain B from PDB  Type:PROTEIN  Length:95
 aligned with K2C5_HUMAN | P13647 from UniProtKB/Swiss-Prot  Length:590

    Alignment length:95
                                   391       401       411       421       431       441       451       461       471     
           K2C5_HUMAN   382 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEG 476
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) -----T----------------E-------------K---------T---------D------------------------P---T-P-----G- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------K- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------IF       - PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 3tnu B 382 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEG 476
                                   391       401       411       421       431       441       451       461       471     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TNU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TNU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TNU)

(-) Gene Ontology  (24, 35)

Asymmetric Unit(hide GO term definitions)
Chain A   (K1C14_HUMAN | P02533)
molecular function
    GO:1990254    keratin filament binding    Interacting selectively and non-covalently with a keratin filament, an intermediate filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0008544    epidermis development    The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species.
    GO:0030855    epithelial cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
    GO:0042633    hair cycle    The cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body.
    GO:0031581    hemidesmosome assembly    Assembly of hemidesmosomes, integrin-containing protein complexes that bind to laminin in the basal lamina. Hemidesmosomes form the contact between the basal surface of epithelial cells and the underlying basal lamina.
    GO:0045110    intermediate filament bundle assembly    The formation of the bundles of intermediate filaments. Intermediate filament-associated proteins (IFAPs) cross-link intermediate filaments with one another, forming a bundle or a network, and with other cell structures, including the plasma membrane. The organization of intermediate filaments and their supportive function in various cells types depends in large part on their linkage to other cell structures via IFAPs.
    GO:0010212    response to ionizing radiation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
    GO:0010043    response to zinc ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
cellular component
    GO:0071944    cell periphery    The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005882    intermediate filament    A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0045095    keratin filament    A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B   (K2C5_HUMAN | P13647)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0097110    scaffold protein binding    Interacting selectively and non-covalently with a scaffold protein. Scaffold proteins are crucial regulators of many key signaling pathways. Although not strictly defined in function, they are known to interact and/or bind with multiple members of a signaling pathway, tethering them into complexes.
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0008544    epidermis development    The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species.
    GO:0031581    hemidesmosome assembly    Assembly of hemidesmosomes, integrin-containing protein complexes that bind to laminin in the basal lamina. Hemidesmosomes form the contact between the basal surface of epithelial cells and the underlying basal lamina.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005882    intermediate filament    A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins.
    GO:0045095    keratin filament    A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  K1C14_HUMAN | P02533
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  K2C5_HUMAN | P13647
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3TNU)