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(-) Description

Title :  STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF HELICOBACTER PYLORI DSBG
 
Authors :  J. Y. Yoon, J. Kim, S. J. Lee, H. S. Kim, H. N. Im, H. Yoon, K. H. Kim, S. Kim, B S. W. Suh
Date :  11 Aug 11  (Deposition) - 09 Nov 11  (Release) - 03 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Thioredoxin Fold, Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Y. Yoon, J. Kim, S. J. Lee, H. S. Kim, H. N. Im, H. Yoon, K. H. Kim, S. Kim, B. W. Han, S. W. Suh
Structural And Functional Characterization Of Helicobacter Pylori Dsbg
Febs Lett. V. 585 3862 2011
PubMed-ID: 22062156  |  Reference-DOI: 10.1016/J.FEBSLET.2011.10.042

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A(+)
    Expression System Strain: ROSETTA2(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HP_0231
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 210
    Synonym: DSBG

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2GOL1Ligand/IonGLYCEROL
3P6G1Ligand/IonHEXAETHYLENE GLYCOL
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1FMT2Ligand/IonFORMIC ACID
2GOL2Ligand/IonGLYCEROL
3P6G2Ligand/IonHEXAETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:73 , HOH A:344 , P6G A:401BINDING SITE FOR RESIDUE GOL A 302
2AC2SOFTWAREALA A:136 , ILE A:137 , GLU A:138 , ARG A:205 , LYS A:214 , HOH A:386BINDING SITE FOR RESIDUE FMT A 360
3AC3SOFTWARESER A:90 , ASN A:91 , ILE A:92 , GLN A:112 , HOH A:276 , GOL A:302 , HOH A:380BINDING SITE FOR RESIDUE P6G A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TDG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:257 -Pro A:258

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
 aligned with O25017_HELPY | O25017 from UniProtKB/TrEMBL  Length:265

    Alignment length:232
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261  
         O25017_HELPY    32 QDNLVSVIEKQTNKKVRILEIKPLKSSQDLKMVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQNSAKLNAIFNEIPADYAIELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTKVENTTKKIFESGVIKGVPFLYHY 263
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...eeeeeee.......eeeeee......eeeeee......eee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee...hhhhh..eeeeee...hhhhhhhhhhhhhhhhhheeeeee....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhh........eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tdg A  32 QDNLVSVIEKQTNKKVRILEIKPLKSSQDLKMVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQNSAKLNAIFNEIPADYAIELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTKVENTTKKIFESGVIKGVPFLYHY 263
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TDG)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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