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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYCOSIDE HYDROLASE FROM SYNECHOCOCCUS COMPLEXED WITH N-ACETYL-D-GLUCOSAMINE
 
Authors :  Y. Kim, G. Chhor, J. Bearden, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)
Date :  05 Jul 11  (Deposition) - 20 Jul 11  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Tim-Barrel, Alpha-Beta-Alpha Sandwich, Hydrolase, Cytosol (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, G. Chhor, J. Bearden, A. Joachimiak
Crystal Structure Of Glycoside Hydrolase From Synechococcus Complexed With N-Acetyl-D-Glucosamine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYCOSYL HYDROLASE FAMILY 3
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: SYNPCC7002_A0075
    Organism Scientific: SYNECHOCOCCUS SP.
    Organism Taxid: 32049
    Strain: PCC 7002

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 58)

Asymmetric Unit (6, 58)
No.NameCountTypeFull Name
1ACY8Ligand/IonACETIC ACID
2GOL6Ligand/IonGLYCEROL
3MSE38Mod. Amino AcidSELENOMETHIONINE
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
6SO41Ligand/IonSULFATE ION
Biological Unit 1 (5, 27)
No.NameCountTypeFull Name
1ACY4Ligand/IonACETIC ACID
2GOL2Ligand/IonGLYCEROL
3MSE18Mod. Amino AcidSELENOMETHIONINE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
6SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (5, 31)
No.NameCountTypeFull Name
1ACY4Ligand/IonACETIC ACID
2GOL4Ligand/IonGLYCEROL
3MSE20Mod. Amino AcidSELENOMETHIONINE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
6SO41Ligand/IonSULFATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:59 , ASP A:88 , ARG A:162 , LYS A:192 , HIS A:193 , HIS A:205 , MSE A:238 , ASP A:277 , HOH A:570BINDING SITE FOR RESIDUE NAG A 540
02AC2SOFTWARESER A:330BINDING SITE FOR RESIDUE ACY A 542
03AC3SOFTWAREARG A:25 , TRP A:40 , PRO A:308BINDING SITE FOR RESIDUE ACY A 543
04AC4SOFTWAREPHE A:531 , ILE B:59 , ASP B:88 , VAL B:158 , ARG B:162 , LYS B:192 , HIS B:193 , HIS B:197 , HIS B:205 , ASP B:277 , ALA B:278 , LEU B:306 , HOH B:561 , HOH B:610BINDING SITE FOR RESIDUE NAG B 540
05AC5SOFTWAREARG B:35 , PRO B:38 , GLN B:39 , ALA B:42 , ASP B:43BINDING SITE FOR RESIDUE GOL B 541
06AC6SOFTWAREGLU B:111 , ARG B:114 , GLU B:166 , GLN B:170 , LYS B:378BINDING SITE FOR RESIDUE PEG B 542
07AC7SOFTWARELYS B:227 , ALA B:228 , GLN B:231BINDING SITE FOR RESIDUE ACY B 543
08AC8SOFTWARELEU B:279 , THR B:285 , ALA B:288 , ALA B:289 , PRO B:290 , VAL B:293 , PRO B:309BINDING SITE FOR RESIDUE GOL B 544
09AC9SOFTWAREILE C:59 , ASP C:88 , VAL C:158 , ARG C:162 , LYS C:192 , HIS C:193 , HIS C:205 , MSE C:238 , ASP C:277 , ALA C:278 , PHE D:531BINDING SITE FOR RESIDUE NAG C 540
10BC1SOFTWAREPRO C:38 , GLN C:39 , GOL C:546BINDING SITE FOR RESIDUE GOL C 541
11BC2SOFTWAREVAL C:400 , ASP C:401 , SER C:402 , SER C:406 , PHE C:449 , LEU C:450 , ARG C:451 , GLN C:505 , HOH C:581BINDING SITE FOR RESIDUE GOL C 542
12BC3SOFTWAREGLU C:10 , GLU C:337BINDING SITE FOR RESIDUE GOL C 543
13BC4SOFTWAREGLU C:166 , LYS C:378 , TYR C:485BINDING SITE FOR RESIDUE ACY C 544
14BC5SOFTWAREASP C:199 , SER C:212 , HIS C:213BINDING SITE FOR RESIDUE SO4 C 545
15BC6SOFTWAREARG C:25 , TRP C:40 , MSE C:307 , PRO C:308 , PRO C:309 , GOL C:541BINDING SITE FOR RESIDUE GOL C 546
16BC7SOFTWAREPHE C:531 , ILE D:59 , ASP D:88 , LEU D:144 , ARG D:162 , LYS D:192 , HIS D:193 , HIS D:205 , MSE D:238 , ASP D:277 , HOH D:573BINDING SITE FOR RESIDUE NAG D 540
17BC8SOFTWAREVAL D:24 , ARG D:25 , TRP D:40 , PRO D:308 , HOH D:568BINDING SITE FOR RESIDUE ACY D 541
18BC9SOFTWAREMSE D:107 , GLU D:111 , GLU D:166 , TYR D:485BINDING SITE FOR RESIDUE ACY D 542
19CC1SOFTWAREILE C:428 , SER D:402 , GLU D:430 , HOH D:552BINDING SITE FOR RESIDUE ACY D 543

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SQM)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Ala A:145 -Pro A:146
2Lys A:192 -His A:193
3Phe A:194 -Pro A:195
4Phe A:354 -Pro A:355
5Ala B:145 -Pro B:146
6Lys B:192 -His B:193
7Phe B:194 -Pro B:195
8Phe B:354 -Pro B:355
9Ala C:145 -Pro C:146
10Lys C:192 -His C:193
11Phe C:194 -Pro C:195
12Phe C:354 -Pro C:355
13Ala D:145 -Pro D:146
14Lys D:192 -His D:193
15Phe D:194 -Pro D:195
16Phe D:354 -Pro D:355

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SQM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SQM)

(-) Exons   (0, 0)

(no "Exon" information available for 3SQM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:514
 aligned with B1XLD2_SYNP2 | B1XLD2 from UniProtKB/TrEMBL  Length:532

    Alignment length:528
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524        
         B1XLD2_SYNP2     5 PLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI 532
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheeeeee...hhhhh.......hhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh.....eeee....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee...............hhhhh...hhhhhhhhhhhhhhhhh....eeeeeee...................hhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhh...........eee.....hhhhhh..hhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..--..........hhhhhhhhhhhhhhhh...--...........eeeeeee............hhhhhhhhhh.eeeeeee..hhhhh......eeeeeee..........hhhhhhhhhhhhh.eeeeeeee...hhhhhhhhh....eeee...hhhhhhhhhhhh.----------.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sqm A   5 PLPPVESLSLRQAIAQmIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPmAFGEIWRTDPHQAIALAETmGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVmNAHLmIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVmGGITQFAAPDTVVVQAIAAGADILLmPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTA--STFPQGISGDRPETRKTVAmVLERATKHQ--LVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQmAIAQAEICTSLW----------AEFI 532
                                    14      | 24        34        44        54        64        74        84        94       104  |    114       124  |    134       144       154       164       174       184       194       204       214       224       234   |   244       254       264       274      |284       294       304  |    314       324       334       344    |  354       364      |374     | 384       394       404       414       424       434       444       454       464       474       484       494       504 |     514   |     -    |   
                                           21-MSE                                                                               107-MSE             127-MSE                                                                                                        238-MSE|                                   281-MSE                   307-MSE                                   349  |                371-MSE  380  |                                                                                                                        506-MSE     518        529   
                                                                                                                                                                                                                                                                        243-MSE                                                                                                      352                            383                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:516
 aligned with B1XLD2_SYNP2 | B1XLD2 from UniProtKB/TrEMBL  Length:532

    Alignment length:527
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       
         B1XLD2_SYNP2     6 LPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI 532
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhheeeeee...hhhhh.......hhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh.....eeee....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...............hhhhh...hhhhhhhhhhhhhhhhh....eeeeeee...................hhhhhhhh.hhhhhhhhhh...eeee............hhhhhhhhhh...........eeee....hhhhhh..hhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh---...........hhhhhhhhhhhhhhhhee..............eeeeeee............hhhhhhhhhh.eeeeeee..hhhhh......eeeeeee...........hhhhhhhhhhhh.eeeeeeee...hhhhhhhhh....eeee...hhhhhhhhhhhhhh--------..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sqm B   6 LPPVESLSLRQAIAQmIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPmAFGEIWRTDPHQAIALAETmGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVmNAHLmIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVmGGITQFAAPDTVVVQAIAAGADILLmPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKIL---PSTFPQGISGDRPETRKTVAmVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQmAIAQAEICTSLWE--------AAEFI 532
                                    15     |  25        35        45        55        65        75        85        95       105 |     115       125 |     135       145       155       165       175       185       195       205       215       225       235  |    245       255       265       275     | 285       295       305 |     315       325       335       345 |   | 355       365     | 375       385       395       405       415       425       435       445       455       465       475       485       495       505|      515   |     -  |    
                                          21-MSE                                                                               107-MSE             127-MSE                                                                                                        238-MSE|                                   281-MSE                   307-MSE                                 347 351                 371-MSE                                                                                                                                506-MSE      519      528    
                                                                                                                                                                                                                                                                       243-MSE                                                                                                                                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:519
 aligned with B1XLD2_SYNP2 | B1XLD2 from UniProtKB/TrEMBL  Length:532

    Alignment length:532
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530  
         B1XLD2_SYNP2     1 MVMAPLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI 532
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhheeeeee...hhhhh.......hhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh.....eeee....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee...............hhhhh...hhhhhhhhhhhhhhhhh....eeeeeee...................hhhhhhhh.hhhhhhhhhh...eeee............hhhhhhhhhh...........eeee....hhhhhh..hhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh-............hhhhhhhhhhhhhhhhee..--..........eeeeeee.hhhhh......hhhhhhhhhh.eeeeeee..hhhhh......eeeeeee...........hhhhhhhhhhhh.eeeeeeee...hhhhhhhhh....eeee...hhhhhhhhhhhh.----------.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sqm C   1 mVmAPLPPVESLSLRQAIAQmIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPmAFGEIWRTDPHQAIALAETmGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVmNAHLmIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVmGGITQFAAPDTVVVQAIAAGADILLmPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILT-TPSTFPQGISGDRPETRKTVAmVLERATKHQK--VKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQmAIAQAEICTSLW----------AEFI 532
                            | |     10        20|       30        40        50        60        70        80        90       100      |110       120      |130       140       150       160       170       180       190       200       210       220       230       240  |    250       260       270       280|      290       300      |310       320       330       340       350       360       370|      380|  |   390       400       410       420       430       440       450       460       470       480       490       500     | 510       | -       530  
                            | |                21-MSE                                                                               107-MSE             127-MSE                                                                                                        238-MSE|                                   281-MSE                   307-MSE                                  348 |                  371-MSE   381  |                                                                                                                       506-MSE     518        529   
                            1-MSE                                                                                                                                                                                                                                           243-MSE                                                                                                    350                               384                                                                                                                                                    
                              3-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:519
 aligned with B1XLD2_SYNP2 | B1XLD2 from UniProtKB/TrEMBL  Length:532

    Alignment length:529
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523         
         B1XLD2_SYNP2     4 APLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQFAAPDTVVVQAIAAGADILLMPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQGISGDRPETRKTVAMVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQMAIAQAEICTSLWEEAPQAAPSAAEFI 532
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.eeeeee...hhhhh.......hhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh....eeee....hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee...............hhhhh...hhhhhhhhhhhhhhhhh....eeeeeee...................hhhhhhhhhhhhhhhhhhhh..eeee................hhhhhhh..........eeee....hhhhhh..hhhhhhhhhhhh....ee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..--..........hhhhhhhhhhhhhhh.................eeeeeee............hhhhhhhhhh.eeeeeee.............eeeeeee...........hhhhhhhhhhhh.eeeeeeee...hhhhhhhhh....eeee...hhhhhhhhhhh...--------..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sqm D   4 APLPPVESLSLRQAIAQmIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAAEVAQKTKQLQSWAEIPLLIAADIEEGVGQRFRGATEFPPPmAFGEIWRTDPHQAIALAETmGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVmNAHLmIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVmGGITQFAAPDTVVVQAIAAGADILLmPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTA--STFPQGISGDRPETRKTVAmVLERATKHQKSLVKISSFPDNFARNLIVVDSVLKSPFLRPNCPAIAIPQRHGYAAEIVELKTLPRLQLEAIPTLIQCFLRGNPFTEKLADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFSYGQmAIAQAEICTSLWE--------AAEFI 532
                                    13       |23        33        43        53        63        73        83        93       103   |   113       123   |   133       143       153       163       173       183       193       203       213       223       233    |  243       253       263       273       283       293       303   |   313       323       333       343     | 353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503  |    513     |   -    |    
                                            21-MSE                                                                               107-MSE             127-MSE                                                                                                        238-MSE|                                   281-MSE                   307-MSE                                   349  |                371-MSE                                                                                                                                506-MSE      519      528    
                                                                                                                                                                                                                                                                         243-MSE                                                                                                      352
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3SQM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SQM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SQM)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (B1XLD2_SYNP2 | B1XLD2)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B1XLD2_SYNP2 | B1XLD2: 3sql

(-) Related Entries Specified in the PDB File

3sql THE SAME PROTEIN, APO-FORM RELATED ID: APC100224 RELATED DB: TARGETDB